Hg_chrom9_TN10mRNA_17902
Organism: Heterodera glycines Gene Locus: chr9:6908528-6909680 Feature type: polypeptideProtein Sequence
Length: 188
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.495 | 0.99 | 1.161 | 0.55 | 1.596 | 1.091 | 1.266 | 1.064 | 1.655 | 1.006 | 0.725 | 1.877 | 1.182 | 1.023 | 1.411 | 0.912 | 0.523 | 0.806 | 0.409 | 0.626 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16924
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.789
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.318
|
0.542
|
0.051
|
0.477
|
0.135
|
0.379
|
0.099
|
0.061
|
0.209
|
0.425
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000395
|
6.000
|
2.000
|
Hsc_gene_8771.t1;Hsc_gene_8801.t1
|
Hsc_gene_8771.t1;Hsc_gene_8783.t1;Hsc_gene_8801.t1
|
— | — |
KAF7638980.1 SHSP domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.918|GO:0005575_0.816|GO:0110165_0.804|GO:0009987_0.791|GO:0005622_0.756|GO:0003674_0.696|GO:0005737_0.665|GO:0050896_0.621|GO:0008152_0.617|GO:0044237_0.602|GO:0009058_0.592|GO:0043170_0.592|GO:0065007_0.583|GO:0044249_0.573|GO:0050789_0.573|GO:0009059_0.571|GO:0010467_0.566|GO:0044238_0.545|GO:0005488_0.532|GO:0006950_0.514|GO:0019538_0.505|GO:0043226_0.503
|
IPR001436+54-135+|IPR002068+41-147_57-144+|IPR008978+28-160_56-145+
|
— |
PF00011+57-144+Hsp20/alpha_crystallin_family
|
— |
PTHR45640+54-135+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-188
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.560
|
20998.700
|
4.837
|
-6.000
|
29.787
|
9.043
|
47.872
|
52.128
|
13.830
|
15.957
|
47.340
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
327.500
|
2204.338
|
224.226
|
45.571
|
73.457
|
47.266
|
495.317
|
236.535
|
138.125
|
81.704
|
105.885
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.530
|
-5.734
|
-2.188
|
0.659
|
-0.622
|
3.402
|
2.228
|
1.206
|
— | — | — |
4.735
|
— |
No JSON data available for plots.