Hg_chrom9_TN10mRNA_17906
Organism: Heterodera glycines Gene Locus: chr9:6915110-6916073 Feature type: polypeptideProtein Sequence
Length: 173
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.807 | 0.941 | 0.631 | 0.199 | 0.771 | 0.593 | 0.757 | 1.445 | 0.899 | 1.015 | 1.576 | 1.7 | 0.803 | 0.778 | 2.005 | 1.486 | 0.948 | 1.139 | 0.445 | 0.85 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16928
|
— | — |
1.333
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.850
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
PKPS,RRRHESGGDRTEKTTKR,KPSGKGANKAVKSTKAVRTGDRKRRKARK
|
25-64
|
0.939
|
— | — | — | — |
0.000
|
— | — |
0.636
|
0.177
|
0.074
|
0.370
|
0.158
|
0.055
|
0.150
|
0.056
|
0.221
|
0.174
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000150
|
8.000
|
5.000
|
Hsc_gene_22290.t1;Hsc_gene_4516.t2;Hsc_gene_8784.t1;Hsc_gene_8800.t1;Hsc_gene_8845.t1
|
Hsc_gene_4516.t1;Hsc_gene_4516.t2;Hsc_gene_8784.t1;Hsc_gene_8800.t1;Hsc_gene_8845.t1
|
F45F2.2
|
Q27876.3 Probable histone H2B 4 [Caenorhabditis elegans]
|
KAI3409880.1 putative histone H2B 4 [Globodera pallida];KAI3411052.1 putative histone H2B 4 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000786|GO:0003677|GO:0030527|GO:0046982
|
GO:0005575_0.907|GO:0110165_0.904|GO:0005622_0.830|GO:0043226_0.816|GO:0043229_0.808|GO:0016020_0.789|GO:0043227_0.715|GO:0043231_0.698|GO:0005634_0.533
|
IPR000558+2-111_25-123_35-53_54-74_76-93_93-106+|IPR007125+12-98+|IPR009072+3-125_9-111+
|
SM00427+25-123+
|
PF00125+12-98+Core_histone_H2A/H2B/H3/H4
|
G3DSA:1.10.20.10:FF:000016+2-141+Histone_H2B
|
PTHR23428+2-111+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-43
|
1.000
|
44-173
|
3c9k_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.639
|
19488.530
|
11.263
|
23.500
|
31.214
|
9.249
|
53.757
|
46.243
|
23.121
|
8.092
|
49.133
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
14.216
|
11.988
|
5.212
|
4.788
|
12.435
|
10.739
|
27.974
|
11.832
|
35.036
|
4.056
|
17.333
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.434
|
-1.460
|
— |
1.341
|
— |
1.391
|
— |
1.381
|
— | — | — | — | — |
No JSON data available for plots.