Hg_chrom9_TN10mRNA_17907
Organism: Heterodera glycines Gene Locus: chr9:6919145-6920555 Feature type: polypeptideProtein Sequence
Length: 199
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.052 | 0.935 | 0.822 | 1.213 | 2.094 | 1.546 | 0.239 | 1.005 | 0.67 | 1.222 | 1.066 | 2.365 | 1.954 | 0.87 | 0.82 | 1.005 | 0.494 | 0.914 | 0.773 | 0.148 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16929
|
— | — |
1.333
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
0.978
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.714
|
0.140
|
0.061
|
0.768
|
0.084
|
0.120
|
0.104
|
0.010
|
0.108
|
0.046
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002571
|
3.000
|
1.000
|
Hsc_gene_8798.t1
|
— | — |
O81057.1 SKP1-like protein 14 [Arabidopsis thaliana]
|
KAI1702234.1 skp1 family, dimerization domain-containing protein [Ditylenchus destructor]
|
KAH0456647
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006511
|
GO:0008150_0.865|GO:0009987_0.706|GO:0065007_0.622|GO:0050789_0.612|GO:0005575_0.601|GO:0110165_0.601|GO:0050794_0.552|GO:0005622_0.527|GO:0050896_0.506
|
IPR011333+21-198_31-97+|IPR016072+147-197+|IPR016897+17-199_31-196+|IPR036296+120-188+
|
— |
PF01466+147-197+Skp1_family,_dimerisation_domain
|
— |
PTHR11165+31-196+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-199
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.844
|
22805.010
|
4.567
|
-10.000
|
30.151
|
10.553
|
50.251
|
49.749
|
13.065
|
17.085
|
43.719
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
39.165
|
1.078
|
2.617
|
6.398
|
27.591
|
49.445
|
39.746
|
91.650
|
77.551
|
31.235
|
51.085
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.438
|
1.385
|
2.081
|
0.854
|
— |
0.779
|
-1.059
|
— |
-3.404
|
— | — | — |
No JSON data available for plots.