Hg_chrom9_TN10mRNA_17910
Organism: Heterodera glycines Gene Locus: chr9:6923133-6924288 Feature type: polypeptideProtein Sequence
Length: 131
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.065 | 1.243 | 0.833 | 0.526 | 1.018 | 0.587 | 0.545 | 0.763 | 0.848 | 0.928 | 0.347 | 1.796 | 1.272 | 0.881 | 2.025 | 1.854 | 0.876 | 1.272 | 0.587 | 0.674 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16932
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— |
RASKRRA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.268
|
0.348
|
0.116
|
0.418
|
0.036
|
0.084
|
0.149
|
0.020
|
0.096
|
0.563
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000395
|
6.000
|
2.000
|
Hsc_gene_8771.t1;Hsc_gene_8801.t1
|
Hsc_gene_8771.t1;Hsc_gene_8801.t1
|
— | — |
KAF7629856.1 SHSP domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR002068+57-104+|IPR008978+28-119_56-100+
|
— |
PF00011+57-104+Hsp20/alpha_crystallin_family
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-131
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.900
|
14544.390
|
8.513
|
3.000
|
24.427
|
9.160
|
50.382
|
49.618
|
13.740
|
10.687
|
56.489
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
248.116
|
909.676
|
71.908
|
18.986
|
17.128
|
10.995
|
253.242
|
161.303
|
246.128
|
359.698
|
311.025
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.897
|
-5.719
|
-1.808
|
— | — |
4.535
|
3.782
|
0.791
|
— |
-3.492
|
-4.108
|
— | — |
No JSON data available for plots.