Hg_chrom9_TN10mRNA_17913
Organism: Heterodera glycines Gene Locus: chr9:6940012-6941590 Feature type: polypeptideProtein Sequence
Length: 206
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.016 | 1.016 | 0.883 | 1.172 | 2.265 | 1.12 | 0.231 | 0.971 | 0.647 | 1.246 | 1.103 | 2.284 | 1.888 | 0.934 | 0.693 | 0.902 | 0.557 | 1.03 | 1.12 | 0.143 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16935
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.734
|
0.163
|
0.033
|
0.817
|
0.070
|
0.158
|
0.134
|
0.006
|
0.078
|
0.058
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002571
|
3.000
|
1.000
|
Hsc_gene_8798.t1
|
— | — |
O81057.1 SKP1-like protein 14 [Arabidopsis thaliana]
|
KAH7711024.1 Protein SKR-1 protein [Aphelenchus avenae]
|
CAA7057921
|
0.190
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006511
|
GO:0008150_0.933|GO:0009987_0.881|GO:0065007_0.825|GO:0050789_0.809|GO:0050794_0.795|GO:0050896_0.787|GO:0051716_0.766|GO:0007154_0.730|GO:0023052_0.729|GO:0042221_0.719|GO:0007165_0.717|GO:0070887_0.693|GO:1901700_0.693|GO:0009719_0.691|GO:0009725_0.683|GO:0033993_0.683|GO:1901701_0.683|GO:0071495_0.679|GO:0071396_0.677|GO:0032870_0.674|GO:0009753_0.670|GO:0009755_0.670|GO:0009867_0.670|GO:0070542_0.670|GO:0071395_0.670|GO:0071398_0.670
|
IPR011333+31-205_41-107+|IPR016072+154-204+|IPR016897+27-206_40-203+|IPR036296+127-195+
|
— |
PF01466+154-204+Skp1_family,_dimerisation_domain
|
— |
PTHR11165+40-203+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-206
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.910
|
23617.920
|
4.392
|
-14.000
|
31.068
|
10.680
|
49.515
|
50.485
|
12.621
|
18.447
|
44.660
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
114.853
|
6.334
|
12.747
|
35.724
|
137.826
|
177.094
|
153.088
|
225.865
|
29.311
|
199.744
|
126.702
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.356
|
1.595
|
1.916
|
— | — | — | — | — | — | — | — | — |
No JSON data available for plots.