Hg_chrom9_TN10mRNA_17914
Organism: Heterodera glycines Gene Locus: chr9:6942669-6945147 Feature type: polypeptideProtein Sequence
Length: 359
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.777 | 0.907 | 0.76 | 1.345 | 0.836 | 1.0 | 0.63 | 0.975 | 1.857 | 1.43 | 0.464 | 3.277 | 2.399 | 0.696 | 0.796 | 0.915 | 0.457 | 1.097 | 1.071 | 1.065 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16936
|
— | — |
1.111
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.634
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.079
|
0.027
|
0.042
|
0.155
|
0.330
|
0.441
|
0.460
|
0.014
|
0.860
|
0.141
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013110
|
1.000
|
1.000
|
Hsc_gene_8797.t1
|
Hsc_gene_12224.t2;Hsc_gene_12224.t4;Hsc_gene_8795.t1;Hsc_gene_8797.t1
|
— |
O17204.2 Organic solute transporter alpha-like protein 1 [Caenorhabditis elegans]
|
KAI6226256.1 Organic solute transporter alpha-like protein 1 [Aphelenchoides fujianensis];KAI6239730.1 Organic solute transporter alpha-like protein 1 [Aphelenchoides fujianensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.913|GO:0110165_0.912|GO:0005886_0.884|GO:0016020_0.884|GO:0071944_0.884|GO:0098590_0.627|GO:1990075_0.540
|
IPR005178+37-321_40-310_43-307+
|
SM01417+40-310+
|
PF03619+43-307+Organic_solute_transporter_Ostalpha
|
— |
PTHR23423+37-321+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
359-359
|
1.000
|
1-358
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.570
|
41037.390
|
5.352
|
-4.500
|
18.106
|
15.599
|
35.097
|
64.903
|
8.914
|
9.192
|
44.011
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
20.155
|
3.610
|
5.987
|
11.817
|
27.007
|
25.368
|
49.735
|
67.709
|
19.003
|
2.216
|
9.410
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.575
|
1.089
|
1.160
|
— |
0.983
|
1.310
|
— | — | — | — | — | — |
No JSON data available for plots.