Hg_chrom9_TN10mRNA_17915
Organism: Heterodera glycines Gene Locus: chr9:6945988-6947981 Feature type: polypeptideProtein Sequence
Length: 204
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.855 | 1.482 | 0.624 | 1.521 | 0.735 | 0.88 | 0.35 | 1.225 | 1.089 | 0.994 | 0.743 | 0.865 | 1.362 | 1.131 | 1.701 | 1.681 | 1.205 | 0.891 | 1.131 | 0.288 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16937
|
— | — |
0.778
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— |
RASKRRA
|
— | — |
37-59
|
0.990
|
— | — |
0.000
|
— | — |
0.198
|
0.258
|
0.138
|
0.423
|
0.085
|
0.081
|
0.195
|
0.024
|
0.102
|
0.456
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000395
|
6.000
|
2.000
|
Hsc_gene_8771.t1;Hsc_gene_8801.t1
|
Hsc_gene_8771.t1;Hsc_gene_8801.t1
|
— | — | — |
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR008978+102-189+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-204
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.855
|
22866.080
|
9.755
|
13.500
|
23.529
|
9.804
|
52.451
|
47.549
|
15.686
|
7.843
|
55.392
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
53.706
|
135.730
|
9.199
|
20.896
|
33.037
|
10.862
|
67.720
|
37.996
|
113.146
|
31.815
|
66.671
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-4.111
|
-2.837
|
1.289
|
0.630
|
-1.590
|
2.655
|
1.708
|
0.978
|
— | — | — | — | — |
No JSON data available for plots.