Hg_chrom9_TN10mRNA_17918
Organism: Heterodera glycines Gene Locus: chr9:6954377-6954759 Feature type: polypeptideProtein Sequence
Length: 80
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.436 | 0.872 | 0.909 | 2.586 | 0.833 | 0.641 | 0.446 | 2.5 | 1.111 | 1.858 | 0.0 | 1.471 | 1.389 | 1.442 | 1.531 | 0.714 | 0.41 | 1.705 | 0.962 | 0.735 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16940
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.001
|
— | — |
0.172
|
0.357
|
0.020
|
0.561
|
0.119
|
0.278
|
0.309
|
0.090
|
0.144
|
0.180
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000944
|
4.000
|
2.000
|
Hsc_gene_8781.t1;Hsc_gene_8781.t2
|
Hsc_gene_8781.t1;Hsc_gene_8781.t2
|
— |
Q9VB98.2 Probable Rho GTPase-activating protein CG5521 [Drosophila melanogaster]
|
KAI1728342.1 rap/ran-GAP domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005096|GO:0005634|GO:0043547|GO:0051056
|
GO:0005575_0.674|GO:0008150_0.667|GO:0110165_0.667|GO:0065007_0.613|GO:0003674_0.539|GO:0005622_0.517|GO:0005488_0.510|GO:0005515_0.510|GO:0005737_0.507
|
IPR027107+11-66+|IPR035974+7-72_10-64+
|
— | — | — |
PTHR10063+11-66+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-80
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.560
|
9168.780
|
6.454
|
0.000
|
22.500
|
13.750
|
36.250
|
63.750
|
12.500
|
10.000
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
6.615
|
9.047
|
4.041
|
2.117
|
3.852
|
3.277
|
13.909
|
6.760
|
14.531
|
1.918
|
7.323
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.391
|
-2.231
|
— | — | — |
2.100
|
— |
1.191
|
— | — | — | — | — |
No JSON data available for plots.