SCN Proteipedia

Hg_chrom9_TN10mRNA_17921

Organism: Heterodera glycines Gene Locus: chr9:6969139-6975852 Feature type: polypeptide

Protein Sequence

Length: 1,105

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.947	1.158	0.987	1.279	0.784	1.415	0.862	2.308	0.865	0.844	0.644	0.799	1.106	1.27	1.514	1.112	1.113	0.686	0.348	0.692	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16943	—	—	1.333	2.000	2.000	1.000	1.000	1.000	1.000	1.000	2.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_Clustered	0.552

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	endoplasmic_reticulum	—	RREQSLKPEWREIRGKRI,GPRPGRRKPRASPQKQLKKD	10-30	0.999	—	—	—	—	0.265	—	—	0.073	0.061	0.010	0.234	0.456	0.324	0.374	0.012	0.449	0.102

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002572	3.000	1.000	Hsc_gene_8793.t1	Hsc_gene_8793.t1;Hsc_gene_8793.t2	—	G5EFD9.1 Disintegrin and metalloproteinase domain-containing protein 10 homolog [Caenorhabditis elegans]	KAI1726905.1 metallo-peptidase family m12B reprolysin-like domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004222\|GO:0006508\|GO:0008237	GO:0008150_0.952\|GO:0009987_0.887\|GO:0005575_0.803\|GO:0110165_0.803\|GO:0065007_0.788\|GO:0050789_0.781\|GO:0050794_0.760\|GO:0032501_0.703\|GO:0050896_0.703\|GO:0003674_0.697\|GO:0032502_0.667\|GO:0016020_0.654\|GO:0048856_0.647\|GO:0071944_0.642\|GO:0005622_0.627\|GO:0005886_0.597\|GO:0016043_0.593\|GO:0071840_0.593\|GO:0051716_0.586\|GO:0007275_0.574\|GO:0048518_0.562\|GO:0048731_0.558\|GO:0008152_0.557\|GO:0043170_0.557\|GO:0048522_0.544\|GO:0044238_0.543\|GO:0043226_0.519\|GO:0007154_0.517\|GO:0003824_0.514\|GO:0140096_0.514\|GO:0023052_0.513\|GO:0019538_0.502\|GO:0030154_0.502\|GO:0048869_0.502	IPR001590+307-561+\|IPR001762+574-675_583-673+\|IPR024079+305-572+\|IPR036436+574-671_583-671+\|IPR049038+712-769+\|IPR051489+25-857+	SM00050+583-673+	PF13574+341-549+Metallo-peptidase_family_M12B_Reprolysin-like\|PF21299+712-769+ADAM10,_cysteine-rich_domain	—	PTHR45702+25-857+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	182-297;833-1105	2.000	1-181;298-832	8esv_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.884	122153.620	8.320	42.500	26.425	11.403	51.493	48.507	16.290	10.136	55.204

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	600.789	648.780	265.892	342.772	482.929	415.232	428.377	383.534	1723.530	222.985	866.076

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.516	-1.058	0.475	0.463	—	—	—	0.302	2.820	—	—	—	—

No JSON data available for plots.

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