Hg_chrom9_TN10mRNA_17926
Organism: Heterodera glycines Gene Locus: chr9:6986514-6994756 Feature type: polypeptideProtein Sequence
Length: 1,033
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.991 | 1.058 | 0.757 | 0.734 | 0.726 | 1.812 | 0.795 | 2.469 | 0.796 | 1.374 | 0.381 | 1.025 | 1.022 | 0.968 | 1.541 | 1.258 | 0.889 | 0.939 | 0.894 | 0.512 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16948
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.979
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RRRR,RREQSLKPEWREIRGKRI
|
— | — | — | — | — | — |
0.000
|
— | — |
0.246
|
0.276
|
0.020
|
0.454
|
0.164
|
0.183
|
0.221
|
0.086
|
0.244
|
0.123
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000944
|
4.000
|
2.000
|
Hsc_gene_8781.t1;Hsc_gene_8781.t2
|
Hsc_gene_8793.t1;Hsc_gene_8793.t2
|
— |
Q6GYQ0.1 Ral GTPase-activating protein subunit alpha-1 [Homo sapiens]
|
KAI1728342.1 rap/ran-GAP domain-containing protein [Ditylenchus destructor]
|
No
|
-0.450
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005096|GO:0005634|GO:0008237|GO:0043547|GO:0051056
|
GO:0008150_0.797|GO:0005575_0.765|GO:0110165_0.765|GO:0065007_0.705|GO:0009987_0.697|GO:0005622_0.636|GO:0003674_0.607|GO:0050789_0.604|GO:0050794_0.595|GO:0016020_0.562|GO:0005488_0.555
|
IPR000331+771-974_800-966+|IPR024079+81-149+|IPR027107+205-955+|IPR035974+763-970_780-954+
|
— |
PF02145+800-966+Rap/ran-GAP
|
G3DSA:3.40.50.11210:FF:000001+780-954+Ral_GTPase-activating_protein_subunit_alpha-1_isoform_1
|
PTHR10063+205-955+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-55;224-275;535-724;986-1033
|
3.000
|
56-223;276-534;725-985
|
9qwp_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.854
|
114638.450
|
8.767
|
41.500
|
23.524
|
11.520
|
49.371
|
50.629
|
15.005
|
8.519
|
51.500
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
2286.164
|
2895.698
|
1601.354
|
1074.850
|
943.487
|
1046.636
|
942.823
|
762.864
|
1348.004
|
5515.570
|
3729.470
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.085
|
-1.567
|
-0.466
|
-0.220
|
0.164
|
— |
-0.559
|
0.447
|
-2.140
|
— |
-2.179
|
— | — |
No JSON data available for plots.