Hg_chrom9_TN10mRNA_17930
Organism: Heterodera glycines Gene Locus: chr9:7002671-7003547 Feature type: polypeptideProtein Sequence
Length: 161
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.722 | 1.011 | 0.226 | 0.214 | 0.725 | 0.637 | 0.961 | 2.174 | 0.69 | 0.671 | 2.07 | 1.096 | 1.553 | 1.194 | 2.282 | 0.355 | 0.611 | 1.882 | 0.0 | 0.913 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16952
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.979
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
LKRKPKEPRGAHL,RKHGVEPLSTFYRVYKR,KKQHKEGNAPFVALKRKPK
|
8-33
|
0.971
|
— | — | — | — |
0.000
|
— | — |
0.344
|
0.274
|
0.139
|
0.571
|
0.237
|
0.118
|
0.058
|
0.004
|
0.060
|
0.073
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005006
|
2.000
|
1.000
|
Hsc_gene_8792.t1
|
Hsc_gene_8792.t1
|
— |
P34334.3 Large ribosomal subunit protein eL21 [Caenorhabditis elegans]
|
KAI1717340.1 ribosomal protein l21e domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.906|GO:0110165_0.903|GO:0005622_0.833|GO:0005737_0.724|GO:0043226_0.716|GO:0043229_0.713|GO:0005829_0.601|GO:0043228_0.578|GO:0043232_0.578|GO:0005840_0.572|GO:0022626_0.572|GO:0032991_0.534|GO:1990904_0.534|GO:0044391_0.525
|
IPR001147+1-99_1-160+|IPR008991+3-99+|IPR018259+37-62+|IPR036948+1-97+
|
— |
PF01157+1-99+Ribosomal_protein_L21e
|
G3DSA:2.30.30.70:FF:000001+1-98+60S_ribosomal_protein_L21
|
PTHR20981+1-160+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-161
|
9cai_CT
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.976
|
18523.930
|
11.908
|
34.500
|
34.783
|
13.043
|
47.826
|
52.174
|
29.193
|
5.590
|
45.342
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
sienna3
|
4655.781
|
1364.088
|
3511.409
|
4374.257
|
4903.699
|
5051.975
|
2963.130
|
1192.141
|
5780.452
|
7273.439
|
6633.588
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.135
|
1.544
|
0.425
|
0.132
|
— |
-0.759
|
-2.192
|
1.458
|
— | — | — | — | — |
No JSON data available for plots.