SCN Proteipedia

Hg_chrom9_TN10mRNA_17931

Organism: Heterodera glycines Gene Locus: chr9:7005356-7011433 Feature type: polypeptide

Protein Sequence

Length: 842

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.621	1.298	1.166	1.72	0.911	1.431	0.891	2.435	1.003	0.963	0.684	0.699	1.386	0.708	1.43	1.069	0.954	0.63	0.64	0.873	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16953	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	20-Egg_ppJ2_pJ2_J3_J4	0.998

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	endoplasmic_reticulum	—	RREQSLKPEWREIRGKRI	15-35	0.999	—	—	—	—	0.171	—	—	0.051	0.048	0.008	0.195	0.552	0.382	0.450	0.009	0.424	0.081

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002572	3.000	1.000	Hsc_gene_8793.t1	Hsc_gene_8793.t1;Hsc_gene_8793.t2	—	G5EFD9.1 Disintegrin and metalloproteinase domain-containing protein 10 homolog [Caenorhabditis elegans]	KAI1726905.1 metallo-peptidase family m12B reprolysin-like domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004222\|GO:0006508\|GO:0008237	GO:0008150_0.950\|GO:0009987_0.881\|GO:0005575_0.803\|GO:0110165_0.803\|GO:0065007_0.775\|GO:0050789_0.764\|GO:0050794_0.733\|GO:0050896_0.714\|GO:0032501_0.680\|GO:0003674_0.679\|GO:0016020_0.672\|GO:0071944_0.668\|GO:0005886_0.634\|GO:0032502_0.631\|GO:0048856_0.617\|GO:0005622_0.611\|GO:0051716_0.586\|GO:0071840_0.564\|GO:0016043_0.560\|GO:0007275_0.538\|GO:0008152_0.535\|GO:0043170_0.535\|GO:0048518_0.533\|GO:0043226_0.527\|GO:0044238_0.519\|GO:0048731_0.517\|GO:0048522_0.513\|GO:0007154_0.503	IPR001590+309-563+\|IPR001762+576-677_585-675+\|IPR024079+307-574+\|IPR036436+576-674_585-673+\|IPR049038+714-771+\|IPR051489+26-835+	SM00050+585-675+	PF13574+343-551+Metallo-peptidase_family_M12B_Reprolysin-like\|PF21299+714-771+ADAM10,_cysteine-rich_domain	—	PTHR45702+26-835+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	184-299;842-842	2.000	1-183;300-841	8esv_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.737	95276.430	7.284	17.500	28.266	13.658	52.732	47.268	16.390	11.876	50.950

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	magenta	853.151	1498.481	1097.414	1166.135	1255.988	1113.949	804.545	959.212	473.879	416.231	440.937

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.678	-0.499	0.196	—	-0.159	-0.461	-0.321	—	—	—	—	—	—

No JSON data available for plots.

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