Hg_chrom9_TN10mRNA_17933
Organism: Heterodera glycines Gene Locus: chr9:7017075-7019842 Feature type: polypeptideProtein Sequence
Length: 298
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.21 | 0.702 | 0.793 | 0.0 | 2.293 | 1.033 | 0.519 | 1.007 | 0.298 | 0.499 | 2.135 | 1.184 | 0.559 | 0.323 | 2.397 | 1.055 | 0.99 | 0.864 | 1.033 | 0.296 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16955
|
— | — |
1.444
|
2.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.958
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKTAEDNKSETKKSKG,KKWHVRTKENVARVRRD,KKERSKKEKKKKRRRHH,TKKSKGGGPTKFMTEEEKRTLKKMRKKERRKKDKKERSKKEKKKKRRRH
|
46-67
|
0.990
|
— | — | — | — |
0.000
|
— | — |
0.911
|
0.034
|
0.001
|
0.073
|
0.015
|
0.020
|
0.134
|
0.005
|
0.049
|
0.033
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005008
|
2.000
|
1.000
|
Hsc_gene_8782.t1
|
Hsc_gene_8782.t1
|
— |
Q96BZ8.2 Leukocyte receptor cluster member 1 [Homo sapiens]
|
KAI1726903.1 leukocyte receptor cluster member 1 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.946|GO:0110165_0.943|GO:0005622_0.929|GO:0043226_0.909|GO:0043229_0.906|GO:0016020_0.889|GO:0005634_0.824|GO:0043227_0.824|GO:0043231_0.824|GO:0031974_0.776|GO:0031981_0.776|GO:0043233_0.776|GO:0070013_0.776|GO:0005654_0.675
|
IPR019339+8-44_9-44+|IPR039875+1-297+
|
SM01083+8-44+
|
PF10197+9-44+N-terminal_domain_of_CBF1_interacting_co-repressor_CIR
|
— |
PTHR22093+1-297+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-298
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.637
|
34498.680
|
10.718
|
26.000
|
45.973
|
6.376
|
66.443
|
33.557
|
27.852
|
18.121
|
42.953
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
370.255
|
229.707
|
189.185
|
157.275
|
209.192
|
158.498
|
258.249
|
166.528
|
604.638
|
653.149
|
632.358
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.511
|
-0.684
|
— |
0.379
|
-0.386
|
0.717
|
— |
0.778
|
— | — | — | — | — |
No JSON data available for plots.