Hg_chrom9_TN10mRNA_17934
Organism: Heterodera glycines Gene Locus: chr9:7020548-7031983 Feature type: polypeptideProtein Sequence
Length: 1,617
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.129 | 0.949 | 0.866 | 0.704 | 0.804 | 1.554 | 0.736 | 2.319 | 1.031 | 1.488 | 0.347 | 0.909 | 1.151 | 0.88 | 1.275 | 1.281 | 0.791 | 1.012 | 1.189 | 0.364 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16956
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.488
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.283
|
0.207
|
0.013
|
0.569
|
0.167
|
0.407
|
0.270
|
0.027
|
0.259
|
0.047
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000944
|
4.000
|
2.000
|
Hsc_gene_8781.t1;Hsc_gene_8781.t2
|
Hsc_gene_8781.t1;Hsc_gene_8781.t2
|
— |
Q6GYQ0.1 Ral GTPase-activating protein subunit alpha-1 [Homo sapiens]
|
KAI1728342.1 rap/ran-GAP domain-containing protein [Ditylenchus destructor]
|
No
|
-0.750
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005096|GO:0005634|GO:0043547|GO:0051056
|
GO:0008150_0.805|GO:0005575_0.747|GO:0110165_0.747|GO:0065007_0.682|GO:0009987_0.674|GO:0003674_0.650|GO:0005622_0.605|GO:0005488_0.573|GO:0050789_0.551|GO:0050794_0.539|GO:0016020_0.535|GO:0005515_0.531
|
IPR000331+1355-1558_1384-1549+|IPR027107+1166-1539+|IPR035974+1348-1554_1364-1538+
|
— |
PF02145+1384-1549+Rap/ran-GAP
|
G3DSA:3.40.50.11210:FF:000001+1364-1538+Ral_GTPase-activating_protein_subunit_alpha-1_isoform_1
|
PTHR10063+1166-1539+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
223-305;1104-1319;1570-1617
|
3.000
|
1-222;306-1103;1320-1569
|
9qwp_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.682
|
178203.930
|
6.997
|
20.500
|
22.758
|
11.565
|
46.691
|
53.309
|
13.173
|
9.586
|
51.824
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
2370.908
|
2161.402
|
1266.438
|
1115.396
|
1225.323
|
1160.581
|
1742.594
|
921.531
|
4808.918
|
3168.559
|
3871.570
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.000
|
-1.092
|
— | — | — |
0.596
|
-0.437
|
1.061
|
— | — | — | — | — |
No JSON data available for plots.