Hg_chrom9_TN10mRNA_17936
Organism: Heterodera glycines Gene Locus: chr9:7041925-7043512 Feature type: polypeptideProtein Sequence
Length: 189
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.492 | 0.861 | 1.443 | 0.0 | 1.411 | 1.357 | 0.756 | 1.323 | 1.529 | 1.144 | 1.443 | 1.867 | 0.735 | 0.814 | 1.62 | 0.983 | 0.867 | 0.401 | 0.814 | 0.778 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16958
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.900
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRK,RKRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.548
|
0.254
|
0.038
|
0.369
|
0.084
|
0.060
|
0.073
|
0.047
|
0.075
|
0.230
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004072
|
2.000
|
1.000
|
Hsc_gene_8779.t1
|
Hsc_gene_8779.t1
|
— | — |
KAI1728345.1 putative DNA helicase Ino80 [Ditylenchus destructor]
|
No
|
-0.330
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.917|GO:0009987_0.867|GO:0065007_0.806|GO:0008152_0.801|GO:0050789_0.801|GO:0044238_0.789|GO:0050794_0.783|GO:0043170_0.777|GO:0006139_0.763|GO:0090304_0.742|GO:0019222_0.741|GO:0080090_0.731|GO:0032502_0.728|GO:0060255_0.728|GO:0019219_0.704|GO:0050793_0.687|GO:0005575_0.677|GO:0110165_0.671|GO:0005622_0.665|GO:0043226_0.614|GO:0043229_0.602|GO:0016020_0.577|GO:0003674_0.560|GO:0043227_0.557|GO:0043231_0.544|GO:0005488_0.528
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-28;178-189
|
1.000
|
29-177
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.727
|
21887.760
|
9.210
|
4.500
|
36.508
|
8.995
|
57.672
|
42.328
|
20.106
|
16.402
|
41.270
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
yellow
|
1005.539
|
294.541
|
416.127
|
422.565
|
502.393
|
535.701
|
706.444
|
529.699
|
2906.347
|
941.670
|
1783.675
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.268
|
0.383
|
— |
0.218
|
— |
0.411
|
— |
0.560
|
— |
-2.619
|
— | — | — |
No JSON data available for plots.