SCN Proteipedia

Hg_chrom9_TN10mRNA_17941

Organism: Heterodera glycines Gene Locus: chr9:7066374-7070026 Feature type: polypeptide

Protein Sequence

Length: 560

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.914	0.789	1.331	0.493	1.756	1.19	0.553	1.518	0.595	1.303	1.001	1.786	1.042	0.824	1.421	0.867	0.907	0.893	0.412	0.63	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16961	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	cytoplasm\|nucleus	—	RRVMKIWAEKEFLNLKRLK,KRLKNANIMCPTPIKLRKH	—	—	—	—	—	—	0.000	—	—	0.609	0.216	0.006	0.641	0.089	0.128	0.143	0.007	0.041	0.034

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001473	3.000	2.000	Hsc_gene_8776.t1;Hsc_gene_8776.t2	Hsc_gene_8773.t1;Hsc_gene_8776.t1;Hsc_gene_8776.t2	—	P34649.1 Serine/threonine-protein kinase RIO3 [Caenorhabditis elegans]	KAI1726887.1 RIO1 family domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004674\|GO:0005524\|GO:0006468	GO:0005575_0.905\|GO:0110165_0.898\|GO:0005622_0.864\|GO:0008150_0.739\|GO:0009987_0.690\|GO:0065007_0.649\|GO:0050789_0.641\|GO:0050794_0.621\|GO:0008152_0.594\|GO:0005737_0.593\|GO:0044238_0.586\|GO:0043170_0.574\|GO:0044237_0.571\|GO:0009058_0.568\|GO:0071840_0.556\|GO:0009059_0.550\|GO:0044249_0.550\|GO:0019222_0.545\|GO:0010467_0.541\|GO:0048518_0.541\|GO:0006139_0.540\|GO:0031323_0.533\|GO:0016020_0.532\|GO:0060255_0.530\|GO:0034654_0.528\|GO:0003674_0.527\|GO:0090304_0.527\|GO:0009889_0.522\|GO:0031326_0.522\|GO:0043226_0.520\|GO:0016070_0.518\|GO:0010556_0.515\|GO:0141187_0.513\|GO:0010468_0.511\|GO:0032774_0.511\|GO:0043229_0.510\|GO:0009893_0.507	IPR000687+211-504+\|IPR011009+324-499+\|IPR017406+2-559+\|IPR018935+436-447+\|IPR051272+47-525+	SM00090+211-504+	PF01163+322-490+RIO1_family	—	PTHR45723+47-525+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-157;261-321;530-560	2.000	158-260;322-529	6zxh_z	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.735	63797.740	5.109	-15.500	34.464	9.464	54.107	45.893	16.607	17.857	46.429

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	grey	2181.299	3609.588	2607.033	2332.702	2916.343	2718.361	2872.866	1830.717	2515.574	573.648	1405.902

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.698	-0.767	—	0.290	—	—	-0.673	0.792	—	—	—	—	—

No JSON data available for plots.

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