Hg_chrom9_TN10mRNA_17943
Organism: Heterodera glycines Gene Locus: chr9:7076054-7077284 Feature type: polypeptideProtein Sequence
Length: 163
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.357 | 0.856 | 1.115 | 0.212 | 1.738 | 1.573 | 0.876 | 1.534 | 1.363 | 0.912 | 1.022 | 2.165 | 1.363 | 0.944 | 1.502 | 0.964 | 0.402 | 1.115 | 0.472 | 0.541 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16963
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.392
|
0.499
|
0.040
|
0.530
|
0.106
|
0.243
|
0.061
|
0.017
|
0.135
|
0.352
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000395
|
6.000
|
2.000
|
Hsc_gene_8771.t1;Hsc_gene_8801.t1
|
Hsc_gene_8771.t1
|
— | — |
KAF7638980.1 SHSP domain-containing protein [Meloidogyne graminicola]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.907|GO:0005575_0.833|GO:0110165_0.830|GO:0005622_0.802|GO:0009987_0.770|GO:0005737_0.707|GO:0003674_0.645|GO:0050896_0.622|GO:0008152_0.620|GO:0043170_0.604|GO:0044237_0.572|GO:0009058_0.563|GO:0044238_0.558|GO:0009059_0.552|GO:0044249_0.552|GO:0065007_0.549|GO:0043226_0.547|GO:0050789_0.541|GO:0010467_0.540|GO:0043229_0.534|GO:0006950_0.526|GO:0019538_0.520|GO:0009628_0.506|GO:0005488_0.503
|
IPR001436+5-149+|IPR002068+42-148_58-145+|IPR008978+29-163_57-146+
|
— |
PF00011+58-145+Hsp20/alpha_crystallin_family
|
— |
PTHR45640+5-149+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
135-163
|
1.000
|
1-134
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.542
|
18788.280
|
6.021
|
-1.500
|
33.742
|
10.429
|
52.761
|
47.239
|
17.178
|
16.564
|
42.331
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
6208.686
|
59215.922
|
1631.371
|
892.764
|
852.113
|
411.285
|
1167.069
|
2829.517
|
1061.973
|
1241.504
|
1164.562
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-5.412
|
-6.189
|
-0.761
|
— |
-1.036
|
1.516
|
2.691
|
-1.141
|
— | — | — | — | — |
No JSON data available for plots.