Hg_chrom9_TN10mRNA_17945
Organism: Heterodera glycines Gene Locus: chr9:7082380-7084653 Feature type: polypeptideProtein Sequence
Length: 394
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.003 | 1.358 | 0.784 | 0.35 | 0.931 | 3.189 | 0.906 | 1.396 | 1.015 | 1.166 | 0.423 | 1.194 | 0.846 | 1.171 | 1.191 | 0.87 | 0.957 | 0.731 | 0.781 | 0.299 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16965
|
— | — |
1.556
|
1.000
|
1.000
|
1.000
|
3.000
|
1.000
|
4.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRR
|
— | — |
12-61
|
0.978
|
— | — |
0.000
|
— | — |
0.857
|
0.104
|
0.004
|
0.466
|
0.062
|
0.019
|
0.041
|
0.012
|
0.052
|
0.080
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000721
|
6.000
|
0.000
|
0.000
|
Hsc_gene_3116.t1;Hsc_gene_7107.t1;Hsc_gene_7107.t2
|
— | — |
KAI3408817.1 hypothetical protein GPALN_016315 [Globodera pallida]
|
WP_200107135
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-163;312-394
|
1.000
|
164-311
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.727
|
43496.550
|
6.572
|
0.500
|
21.320
|
7.868
|
51.523
|
48.477
|
11.421
|
9.898
|
50.254
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
tan
|
13.909
|
6.115
|
6.570
|
2.888
|
1.809
|
9.243
|
3.252
|
22.432
|
51.972
|
2.257
|
23.563
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.220
|
— | — |
2.364
|
-1.494
|
1.185
|
-2.646
|
— |
-3.967
|
— | — | — |
No JSON data available for plots.