Hg_chrom9_TN10mRNA_17950
Organism: Heterodera glycines Gene Locus: chr9:7121053-7122204 Feature type: polypeptideProtein Sequence
Length: 161
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.361 | 0.867 | 0.903 | 0.643 | 1.76 | 1.274 | 0.961 | 1.553 | 1.38 | 0.923 | 0.941 | 2.192 | 1.208 | 1.075 | 1.521 | 0.799 | 0.611 | 1.129 | 0.478 | 0.548 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16969
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.958
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.393
|
0.525
|
0.034
|
0.562
|
0.090
|
0.268
|
0.067
|
0.017
|
0.144
|
0.310
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000395
|
6.000
|
2.000
|
Hsc_gene_8771.t1;Hsc_gene_8801.t1
|
Hsc_gene_8771.t1;Hsc_gene_8801.t1
|
— | — |
KAF7638980.1 SHSP domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.907|GO:0005575_0.831|GO:0110165_0.824|GO:0005622_0.778|GO:0009987_0.760|GO:0005737_0.692|GO:0003674_0.665|GO:0050896_0.632|GO:0008152_0.629|GO:0043170_0.597|GO:0044237_0.574|GO:0065007_0.560|GO:0009058_0.557|GO:0044238_0.555|GO:0050789_0.544|GO:0009059_0.541|GO:0044249_0.541|GO:0010467_0.535|GO:0006950_0.527|GO:0019538_0.527|GO:0043226_0.512|GO:0005488_0.511|GO:0009628_0.502
|
IPR001436+32-135+|IPR002068+41-147_57-144+|IPR008978+28-161_56-145+
|
— |
PF00011+57-144+Hsp20/alpha_crystallin_family
|
— |
PTHR45640+32-135+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
139-161
|
1.000
|
1-138
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.597
|
18414.990
|
6.339
|
-0.500
|
32.298
|
9.938
|
50.311
|
49.689
|
16.770
|
15.528
|
44.099
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
3496.905
|
21779.628
|
3539.017
|
496.425
|
500.075
|
496.138
|
1490.159
|
1144.298
|
2147.658
|
2646.062
|
2432.461
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.855
|
-5.592
|
-2.722
|
— | — |
1.597
|
1.111
|
— | — | — | — |
-2.912
|
— |
No JSON data available for plots.