Hg_chrom9_TN10mRNA_17951
Organism: Heterodera glycines Gene Locus: chr9:7124922-7126045 Feature type: polypeptideProtein Sequence
Length: 130
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.894 | 1.431 | 0.42 | 0.0 | 1.282 | 0.592 | 1.282 | 1.538 | 0.513 | 1.767 | 1.166 | 0.452 | 0.214 | 0.888 | 1.884 | 1.099 | 0.504 | 1.282 | 0.0 | 0.679 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16970
|
— | — |
1.222
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.974
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
GKGGKAKTEDGKNKSR
|
19-39
|
0.997
|
— | — | — | — |
0.000
|
— | — |
0.662
|
0.194
|
0.071
|
0.473
|
0.109
|
0.078
|
0.099
|
0.006
|
0.096
|
0.073
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000315
|
6.000
|
3.000
|
Hsc_gene_14191.t1;Hsc_gene_8791.t1;Hsc_gene_8802.t1
|
Hsc_gene_8791.t1;Hsc_gene_8802.t1
|
— |
P09588.2 Histone H2A [Caenorhabditis elegans]
|
KAI3411053.1 imidazoleglycerol-phosphate dehydratase [Globodera pallida]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000786|GO:0003677|GO:0030527|GO:0046982
|
GO:0005575_0.856|GO:0110165_0.856|GO:0043226_0.761|GO:0005622_0.742|GO:0016020_0.727|GO:0043229_0.701|GO:0043227_0.670|GO:0043231_0.587|GO:0008150_0.536
|
IPR002119+5-125_7-122_13-123_16-38_45-60_60-73_74-88_102-120+|IPR007125+6-91+|IPR009072+3-129_7-129+|IPR032454+94-126+|IPR032458+24-30+
|
SM00414+5-125+
|
PF00125+6-91+Core_histone_H2A/H2B/H3/H4|PF16211+94-126+C-terminus_of_histone_H2A
|
G3DSA:1.10.20.10:FF:000020+2-127+Histone_H2A
|
PTHR23430+13-123+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-32;115-130
|
1.000
|
33-114
|
6k1k_G
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.841
|
14145.170
|
10.837
|
11.000
|
30.000
|
6.154
|
49.231
|
50.769
|
20.000
|
10.000
|
50.769
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
red
|
100.242
|
26.319
|
13.641
|
28.408
|
81.978
|
78.678
|
308.067
|
42.933
|
4.112
|
217.968
|
126.315
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.182
|
— |
1.169
|
1.498
|
— |
1.979
|
-0.985
|
2.989
|
-5.830
|
— | — | — | — |
No JSON data available for plots.