SCN Proteipedia

Hg_chrom9_TN10mRNA_17954

Organism: Heterodera glycines Gene Locus: chr9:7134126-7141047 Feature type: polypeptide

Protein Sequence

Length: 766

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.093	1.548	0.831	0.81	0.762	1.506	0.73	2.154	0.986	1.217	0.495	0.922	0.653	0.954	1.465	1.511	0.856	0.593	1.305	0.576	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16973	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_described	0.986

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.274	0.276	0.053	0.619	0.217	0.308	0.345	0.106	0.425	0.110

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0013111	1.000	1.000	Hsc_gene_8805.t1	Hsc_gene_3980.t1;Hsc_gene_4002.t1;Hsc_gene_4002.t2;Hsc_gene_4003.t1;Hsc_gene_8805.t1;Hsc_gene_8807.t1;Hsc_gene_8809.t1	—	B2RUR8.1 OTU domain-containing protein 7B [Mus musculus]	KAI6208554.1 OTU domain-containing protein [Aphelenchoides besseyi]	No	-0.300

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.966\|GO:0005575_0.832\|GO:0110165_0.832\|GO:0003674_0.812\|GO:0005622_0.764\|GO:0009987_0.733\|GO:0065007_0.729\|GO:0050789_0.721\|GO:0008152_0.716\|GO:0043170_0.716\|GO:0050794_0.710\|GO:0044238_0.688\|GO:0050896_0.646\|GO:0003824_0.643\|GO:0140096_0.643\|GO:0016787_0.634\|GO:0019538_0.630\|GO:0008233_0.618\|GO:0005737_0.610\|GO:0051716_0.608\|GO:0019783_0.602\|GO:0101005_0.602\|GO:0043412_0.597\|GO:0036211_0.596\|GO:0032501_0.591\|GO:0043687_0.582\|GO:0070647_0.582\|GO:0004843_0.574\|GO:0008234_0.574\|GO:0016579_0.574\|GO:0070646_0.574\|GO:0007154_0.568\|GO:0023052_0.568\|GO:0007165_0.556\|GO:0048583_0.542\|GO:0048519_0.540\|GO:0010646_0.535\|GO:0023051_0.534\|GO:0009966_0.531\|GO:0019222_0.529\|GO:0032502_0.528\|GO:0048856_0.528\|GO:0031323_0.527\|GO:0044237_0.527\|GO:0048523_0.524\|GO:0060255_0.512\|GO:0009058_0.509\|GO:0009059_0.509\|GO:0044249_0.509\|GO:0080090_0.506\|GO:0010467_0.504	IPR003323+91-297_98-291+\|IPR051346+63-337+	—	PF02338+98-291+OTU-like_cysteine_protease	—	PTHR13367+63-337+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	167-218;430-584;709-766	3.000	1-166;219-429;585-708	5lrv_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.907	84635.540	8.494	26.500	23.890	10.313	52.219	47.781	14.752	9.138	53.786

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	1369.630	1978.631	1510.143	1373.494	1591.008	1743.655	1165.076	952.758	528.865	1727.447	1213.769

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.619	-0.664	—	0.180	0.147	-0.573	-0.977	0.431	—	—	—	—	—

No JSON data available for plots.

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