Hg_chrom9_TN10mRNA_17960
Organism: Heterodera glycines Gene Locus: chr9:7180990-7183120 Feature type: polypeptideProtein Sequence
Length: 148
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.179 | 0.786 | 0.86 | 0.699 | 1.239 | 1.04 | 0.885 | 2.703 | 0.901 | 0.639 | 0.717 | 2.385 | 0.751 | 1.299 | 1.793 | 0.676 | 0.554 | 1.024 | 1.559 | 0.795 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16979
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.050
|
0.971
|
0.025
|
0.097
|
0.016
|
0.071
|
0.049
|
0.004
|
0.046
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002574
|
3.000
|
1.000
|
Hsc_gene_8819.t1
|
Hsc_gene_8819.t1
|
— |
Q19724.1 Probable NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Caenorhabditis elegans]
|
KAI1726916.1 zinc-finger domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.838|GO:0110165_0.822|GO:0005622_0.771|GO:0005737_0.730|GO:0016020_0.719|GO:0043226_0.713|GO:0043229_0.685|GO:0043227_0.683|GO:0043231_0.667|GO:0008150_0.631|GO:0005739_0.564|GO:0009987_0.551|GO:0008152_0.539|GO:0044238_0.508|GO:0044237_0.507
|
IPR019401+95-130+
|
— |
PF10276+95-130+Zinc-finger_domain
|
G3DSA:2.60.260.40:FF:000003+86-135+NADH_dehydrogenase_[ubiquinone]_iron-sulfur_protein_6,_mitochondrial
|
PTHR13156+50-133+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-54
|
1.000
|
55-148
|
8esz_S6
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.776
|
16747.010
|
8.307
|
6.000
|
31.081
|
12.838
|
46.622
|
53.378
|
18.919
|
12.162
|
49.324
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
brown
|
156.159
|
127.085
|
203.683
|
189.480
|
237.251
|
229.106
|
268.071
|
350.613
|
95.224
|
9.794
|
46.407
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.451
|
0.440
|
— |
0.294
|
— | — |
0.508
|
-0.246
|
— | — |
4.516
|
— | — |
No JSON data available for plots.