Hg_chrom9_TN10mRNA_17962
Organism: Heterodera glycines Gene Locus: chr9:7188478-7190337 Feature type: polypeptideProtein Sequence
Length: 296
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.864 | 0.393 | 1.351 | 1.98 | 0.845 | 1.04 | 0.603 | 0.845 | 1.652 | 1.552 | 0.461 | 2.583 | 1.783 | 0.715 | 0.758 | 0.869 | 0.554 | 1.126 | 1.559 | 0.795 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16981
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.504
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.062
|
0.044
|
0.024
|
0.168
|
0.327
|
0.588
|
0.590
|
0.024
|
0.822
|
0.116
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000325
|
6.000
|
3.000
|
Hsc_gene_23529.t1;Hsc_gene_8795.t1;Hsc_gene_8852.t1
|
Hsc_gene_12115.t1;Hsc_gene_12224.t2;Hsc_gene_12224.t4;Hsc_gene_15336.t1
|
— |
O17204.2 Organic solute transporter alpha-like protein 1 [Caenorhabditis elegans]
|
KAI1728616.1 organic solute transporter ostalpha domain-containing protein [Ditylenchus destructor]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.915|GO:0110165_0.915|GO:0005886_0.901|GO:0016020_0.901|GO:0071944_0.901|GO:0098590_0.653|GO:1990075_0.540
|
IPR005178+33-152_40-238_42-150+
|
SM01417+40-238+
|
PF03619+42-150+Organic_solute_transporter_Ostalpha
|
— |
PTHR23423+33-152+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
278-296
|
1.000
|
1-277
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.855
|
33414.120
|
4.311
|
-14.500
|
20.946
|
12.838
|
36.149
|
63.851
|
8.446
|
12.500
|
47.973
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
64.030
|
9.627
|
22.355
|
21.000
|
62.004
|
47.559
|
86.740
|
216.900
|
64.467
|
56.964
|
60.179
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.987
|
0.988
|
— |
1.534
|
— |
0.876
|
2.086
|
-1.181
|
— | — | — | — | — |
No JSON data available for plots.