Hg_chrom9_TN10mRNA_17967
Organism: Heterodera glycines Gene Locus: chr9:7236705-7237447 Feature type: polypeptideProtein Sequence
Length: 100
(Signal peptide: 1-26)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.698 | 0.233 | 0.545 | 4.828 | 0.333 | 0.0 | 0.476 | 0.5 | 0.889 | 2.162 | 0.303 | 1.176 | 2.222 | 1.731 | 0.204 | 1.857 | 0.164 | 1.515 | 0.769 | 0.588 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16986
|
— | — |
1.444
|
1.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — | — | — | — | — |
1-26
|
0.999
|
0.999
|
1.000
|
1.000
|
0.127
|
0.030
|
0.009
|
0.191
|
0.228
|
0.656
|
0.298
|
0.008
|
0.729
|
0.152
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002575
|
3.000
|
1.000
|
Hsc_gene_22460.t1
|
Hsc_gene_22460.t1;Hsc_gene_24658.t1;Hsc_gene_8815.t1;Hsc_gene_8851.t1
|
— | — |
KAF7637861.1 hypothetical protein Mgra_00002564 [Meloidogyne graminicola]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.932|GO:0110165_0.930|GO:0071944_0.895|GO:0005886_0.890|GO:0016020_0.890|GO:0030054_0.589|GO:0045202_0.577|GO:0098590_0.573|GO:0042995_0.559|GO:0120025_0.558|GO:0043005_0.553|GO:0036477_0.548|GO:0044297_0.548|GO:0043025_0.545|GO:0032809_0.540|GO:0044298_0.540
|
IPR022559+45-79+
|
— |
PF10853+45-79+Protein_of_unknown_function_(DUF2650)
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-100
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.726
|
10697.970
|
4.628
|
-1.500
|
9.000
|
12.000
|
24.000
|
76.000
|
4.000
|
5.000
|
61.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
98.167
|
6.715
|
13.951
|
12.032
|
28.154
|
426.848
|
14.100
|
361.294
|
0.000
|
105.821
|
60.469
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.821
|
— | — |
1.199
|
3.933
|
-4.911
|
— |
-4.534
|
-7.506
|
4.446
|
— | — | — |