Hg_chrom9_TN10mRNA_17968
Organism: Heterodera glycines Gene Locus: chr9:7238334-7241117 Feature type: polypeptideProtein Sequence
Length: 368
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.79 | 0.506 | 1.038 | 1.593 | 0.951 | 0.975 | 0.615 | 0.951 | 1.751 | 1.506 | 0.371 | 2.717 | 1.963 | 0.679 | 0.943 | 1.009 | 0.49 | 1.235 | 1.254 | 0.879 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16987
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.785
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.069
|
0.034
|
0.021
|
0.169
|
0.363
|
0.552
|
0.592
|
0.011
|
0.833
|
0.108
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000325
|
6.000
|
3.000
|
Hsc_gene_23529.t1;Hsc_gene_8795.t1;Hsc_gene_8852.t1
|
Hsc_gene_12115.t1;Hsc_gene_12224.t2;Hsc_gene_12224.t4;Hsc_gene_15336.t1;Hsc_gene_23529.t1;Hsc_gene_8816.t1;Hsc_gene_8824.t1;Hsc_gene_8828.t1;Hsc_gene_8852.t1
|
— |
O17204.2 Organic solute transporter alpha-like protein 1 [Caenorhabditis elegans]
|
KAI1728616.1 organic solute transporter ostalpha domain-containing protein [Ditylenchus destructor]
|
No
|
-0.720
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.920|GO:0110165_0.920|GO:0005886_0.904|GO:0016020_0.904|GO:0071944_0.904|GO:0098590_0.649|GO:1990075_0.540
|
IPR005178+33-328_40-310_42-307+
|
SM01417+40-310+
|
PF03619+42-307+Organic_solute_transporter_Ostalpha
|
— |
PTHR23423+33-328+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
350-368
|
1.000
|
1-349
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.752
|
41738.940
|
4.572
|
-12.500
|
20.380
|
13.587
|
36.413
|
63.587
|
8.967
|
11.413
|
46.196
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
179.201
|
38.914
|
60.084
|
73.072
|
196.107
|
187.316
|
132.384
|
294.672
|
31.590
|
391.856
|
237.456
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.397
|
0.771
|
0.390
|
1.394
|
— |
-0.487
|
0.550
|
-1.009
|
-3.768
|
— | — | — | — |
No JSON data available for plots.