Hg_chrom9_TN10mRNA_17969
Organism: Heterodera glycines Gene Locus: chr9:7242831-7244876 Feature type: polypeptideProtein Sequence
Length: 148
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.179 | 0.629 | 0.86 | 0.699 | 1.126 | 0.866 | 0.965 | 2.703 | 0.901 | 0.639 | 0.819 | 2.385 | 0.751 | 1.299 | 1.793 | 0.772 | 0.554 | 1.024 | 1.559 | 0.795 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16988
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.050
|
0.970
|
0.026
|
0.094
|
0.015
|
0.071
|
0.048
|
0.004
|
0.047
|
0.056
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002574
|
3.000
|
1.000
|
Hsc_gene_8819.t1
|
Hsc_gene_8819.t1
|
— |
Q19724.1 Probable NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Caenorhabditis elegans]
|
KAI1726916.1 zinc-finger domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.841|GO:0110165_0.827|GO:0005622_0.770|GO:0005737_0.730|GO:0016020_0.726|GO:0043226_0.717|GO:0043229_0.689|GO:0043227_0.688|GO:0043231_0.672|GO:0008150_0.628|GO:0005739_0.565|GO:0009987_0.545|GO:0008152_0.536|GO:0044238_0.506|GO:0044237_0.504
|
IPR019401+95-130+
|
— |
PF10276+95-130+Zinc-finger_domain
|
G3DSA:2.60.260.40:FF:000003+86-135+NADH_dehydrogenase_[ubiquinone]_iron-sulfur_protein_6,_mitochondrial
|
PTHR13156+50-133+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-54
|
1.000
|
55-148
|
8esz_S6
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.856
|
16647.960
|
9.152
|
8.000
|
31.081
|
12.838
|
45.946
|
54.054
|
19.595
|
11.486
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightcyan
|
2147.813
|
2331.287
|
2148.648
|
2211.570
|
2125.449
|
1916.814
|
989.532
|
1188.531
|
4120.233
|
1464.572
|
2602.712
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.346
|
-0.213
|
0.149
|
-0.089
|
— |
-0.946
|
-0.795
|
— | — | — | — |
-7.196
|
— |
No JSON data available for plots.