SCN Proteipedia

Hg_chrom9_TN10mRNA_17971

Organism: Heterodera glycines Gene Locus: chr9:7259605-7264176 Feature type: polypeptide

Protein Sequence

Length: 636

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.823	0.914	0.829	1.193	0.655	1.855	0.524	2.516	1.083	1.126	0.381	1.48	1.398	1.27	1.733	1.19	0.67	0.905	1.33	0.555	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16990	—	—	1.333	1.000	1.000	1.000	1.000	2.000	2.000	2.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	0.995

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cell_membrane	—	—	67-87	0.998	59-79	0.999	—	—	0.000	—	—	0.235	0.115	0.086	0.436	0.101	0.045	0.125	0.036	0.610	0.126

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001476	3.000	2.000	Hsc_gene_21972.t1;Hsc_gene_3981.t1	Hsc_gene_4003.t1;Hsc_gene_8805.t1	—	Q8TE49.1 OTU domain-containing protein 7A [Homo sapiens]	KAI6203775.1 OTU domain-containing protein [Aphelenchoides besseyi]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.969\|GO:0005575_0.904\|GO:0110165_0.904\|GO:0003674_0.885\|GO:0005622_0.809\|GO:0008152_0.809\|GO:0043170_0.809\|GO:0044238_0.798\|GO:0019538_0.739\|GO:0036211_0.712\|GO:0043412_0.712\|GO:0003824_0.710\|GO:0140096_0.706\|GO:0005737_0.700\|GO:0065007_0.687\|GO:0016787_0.685\|GO:0009987_0.684\|GO:0043687_0.683\|GO:0070647_0.683\|GO:0050789_0.677\|GO:0008233_0.672\|GO:0050794_0.671\|GO:0004843_0.670\|GO:0008234_0.670\|GO:0016579_0.670\|GO:0019783_0.670\|GO:0070646_0.670\|GO:0101005_0.670\|GO:0050896_0.609\|GO:0032501_0.606\|GO:0051716_0.581\|GO:0007154_0.567\|GO:0023052_0.567\|GO:0019222_0.560\|GO:0031323_0.552\|GO:0044237_0.552\|GO:0048519_0.552\|GO:0007165_0.549\|GO:0009058_0.536\|GO:0060255_0.535\|GO:0080090_0.532\|GO:0048523_0.531\|GO:0009059_0.526\|GO:0044249_0.526\|GO:0009889_0.519\|GO:0010556_0.516\|GO:0031326_0.516\|GO:0023051_0.513\|GO:0010646_0.512\|GO:0010467_0.511\|GO:0010468_0.510\|GO:0048583_0.510\|GO:0006139_0.502	IPR028085+220-276+	—	PF14637+220-276+Folliculin-interacting_protein_middle_domain	—	—

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	501-636	1.000	1-500	5lrv_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.855	72678.950	8.786	32.000	24.528	13.679	48.113	51.887	16.038	8.491	48.428

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	871.258	2224.503	1216.818	799.974	631.964	535.551	440.815	624.723	154.918	1267.685	790.785

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.101	-1.613	-0.496	-0.371	-0.225	-0.271	—	-0.361	-3.138	—	—	—	—

No JSON data available for plots.

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