Hg_chrom9_TN10mRNA_17974
Organism: Heterodera glycines Gene Locus: chr9:7283731-7284234 Feature type: polypeptideProtein Sequence
Length: 80
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.436 | 1.163 | 0.227 | 1.293 | 1.667 | 0.321 | 0.298 | 0.0 | 2.222 | 1.351 | 0.568 | 2.941 | 2.778 | 0.962 | 1.531 | 0.714 | 0.82 | 1.326 | 0.962 | 0.368 | 0.0 |
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Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16993
|
— | — |
2.556
|
1.000
|
1.000
|
1.000
|
4.000
|
5.000
|
5.000
|
3.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.557
|
0.425
|
0.028
|
0.656
|
0.266
|
0.079
|
0.146
|
0.032
|
0.068
|
0.247
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000325
|
6.000
|
3.000
|
Hsc_gene_23529.t1;Hsc_gene_8795.t1;Hsc_gene_8852.t1
|
Hsc_gene_15336.t1;Hsc_gene_15337.t1;Hsc_gene_8795.t1;Hsc_gene_8797.t1;Hsc_gene_8816.t1;Hsc_gene_8824.t1;Hsc_gene_8828.t1;Hsc_gene_8852.t1
|
— |
O17204.2 Organic solute transporter alpha-like protein 1 [Caenorhabditis elegans]
|
KAI1728616.1 organic solute transporter ostalpha domain-containing protein [Ditylenchus destructor]
|
No
|
-0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.921|GO:0110165_0.911|GO:0016020_0.816|GO:0005886_0.701|GO:0071944_0.701|GO:0098590_0.553|GO:1990075_0.540
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-80
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.522
|
9406.230
|
6.225
|
0.000
|
22.500
|
12.500
|
38.750
|
61.250
|
11.250
|
11.250
|
40.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
1.970
|
1.066
|
0.959
|
3.012
|
4.624
|
1.403
|
2.745
|
2.336
|
0.514
|
2.179
|
1.466
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.