Hg_chrom9_TN10mRNA_17976
Organism: Heterodera glycines Gene Locus: chr9:7302612-7303112 Feature type: polypeptideProtein Sequence
Length: 122
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.525 | 1.144 | 0.596 | 1.696 | 0.546 | 0.631 | 1.171 | 2.049 | 0.729 | 0.554 | 0.869 | 0.964 | 0.911 | 0.788 | 2.844 | 0.234 | 0.672 | 1.242 | 0.631 | 0.964 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16995
|
— | — |
1.778
|
3.000
|
3.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RPRGGGRNPAKARGARAKRRIGNKRKA
|
14-82
|
0.981
|
— | — | — | — |
0.000
|
— | — |
0.736
|
0.196
|
0.012
|
0.546
|
0.050
|
0.038
|
0.044
|
0.005
|
0.035
|
0.158
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004197
|
2.000
|
1.000
|
Hsc_gene_8822.t1
|
Hsc_gene_8822.t1
|
— | — | — |
KAF3331932
|
0.460
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.821|GO:0005575_0.698|GO:0110165_0.692|GO:0003674_0.686|GO:0005488_0.628|GO:0005622_0.609|GO:0009987_0.545|GO:0005515_0.539|GO:0008152_0.509|GO:0043226_0.502
|
IPR001841+46-85_46-86+|IPR013083+18-119+|IPR050731+25-87+
|
SM00184+46-85+
|
PF13639+46-85+Ring_finger_domain
|
— |
PTHR22763+25-87+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-33;121-122
|
1.000
|
34-120
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.825
|
13607.710
|
11.111
|
18.500
|
30.328
|
11.475
|
43.443
|
56.557
|
23.770
|
6.557
|
54.098
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
lightyellow
|
354.366
|
2.511
|
3.564
|
2.436
|
7.094
|
61.431
|
63.083
|
978.680
|
0.000
|
1130.800
|
646.171
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
1.505
|
3.133
|
— |
3.883
|
-3.808
|
-10.952
|
— |
-7.130
|
— | — |
No JSON data available for plots.