Hg_chrom9_TN10mRNA_17977
Organism: Heterodera glycines Gene Locus: chr9:7304064-7306226 Feature type: polypeptideProtein Sequence
Length: 220
(Signal peptide: 1-26)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.74 | 0.951 | 0.579 | 2.508 | 0.379 | 0.466 | 0.487 | 1.136 | 1.313 | 1.597 | 0.758 | 0.535 | 1.894 | 1.836 | 0.649 | 1.429 | 0.671 | 1.24 | 0.699 | 0.668 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16996
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.676
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — |
1-26
|
0.998
|
0.999
|
2.000
|
2.000
|
0.124
|
0.042
|
0.007
|
0.218
|
0.190
|
0.546
|
0.204
|
0.005
|
0.726
|
0.169
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002575
|
3.000
|
1.000
|
Hsc_gene_22460.t1
|
Hsc_gene_22460.t1;Hsc_gene_24658.t1;Hsc_gene_8815.t1;Hsc_gene_8823.t1;Hsc_gene_8851.t1
|
— |
P35129.1 Ubiquitin-conjugating enzyme E2 2 [Caenorhabditis elegans]
|
KAH7695483.1 ubiquitin conjugating enzyme 2, partial [Aphelenchus avenae]
|
No
|
-0.240
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.867|GO:0003674_0.791|GO:0008152_0.641|GO:0003824_0.640|GO:0044238_0.629|GO:0016740_0.628|GO:0140096_0.625|GO:0043170_0.622|GO:0016746_0.616|GO:0019538_0.615|GO:0016755_0.608|GO:0019787_0.608|GO:0004842_0.606|GO:0005575_0.572|GO:0110165_0.572
|
IPR000608+100-220_135-219_135-220+|IPR016135+105-220_135-219+|IPR022559+45-79+
|
SM00212+103-220+
|
PF00179+135-219+Ubiquitin-conjugating_enzyme|PF10853+45-79+Protein_of_unknown_function_(DUF2650)
|
— |
PTHR24068+135-218+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-220
|
2ayv_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.937
|
24077.460
|
8.181
|
8.500
|
15.909
|
12.273
|
35.909
|
64.091
|
10.455
|
5.455
|
56.818
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
red
|
48.527
|
6.833
|
16.151
|
15.313
|
24.107
|
56.227
|
18.775
|
138.133
|
3.792
|
106.133
|
62.273
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.018
|
1.029
|
— |
0.623
|
1.236
|
-1.572
|
1.187
|
-2.733
|
— | — | — | — | — |