Hg_chrom9_TN10mRNA_17979
Organism: Heterodera glycines Gene Locus: chr9:7319147-7323416 Feature type: polypeptideProtein Sequence
Length: 464
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.952 | 1.203 | 1.019 | 0.52 | 0.611 | 1.216 | 0.821 | 1.724 | 1.149 | 1.107 | 0.686 | 1.902 | 1.497 | 1.243 | 2.023 | 0.831 | 0.601 | 0.816 | 1.16 | 0.444 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16998
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
RKKRRKNRQIKQKQRRRQL,KRRRRHRHRPRRQRHDRRRRSG
|
42-76
|
0.993
|
76-97
|
1.000
|
— | — |
0.000
|
— | — |
0.060
|
0.048
|
0.010
|
0.257
|
0.346
|
0.164
|
0.272
|
0.006
|
0.240
|
0.598
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002576
|
1.000
|
3.000
|
Hsc_gene_11550.t1;Hsc_gene_8833.t1;Hsc_gene_8838.t1
|
Hsc_gene_8838.t1
|
— |
P81908.1 Cholinesterase [Equus caballus]
|
ACM90171.1 acetylcholinesterase [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004104
|
GO:0003674_0.806|GO:0008150_0.785|GO:0005575_0.695|GO:0110165_0.695|GO:0009987_0.649|GO:0003824_0.618|GO:0016787_0.560|GO:0016020_0.553|GO:0008152_0.551|GO:0016788_0.535|GO:0052689_0.522
|
IPR000997+178-192_220-249+|IPR002018+111-369+|IPR019826+291-306+|IPR029058+107-464_111-444+|IPR050654+64-454+
|
— |
PF00135+111-369+Carboxylesterase_family
|
— |
PTHR43918+64-454+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-43;361-411
|
2.000
|
44-360;412-464
|
6emi_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.804
|
52652.440
|
10.727
|
32.000
|
27.155
|
11.853
|
46.552
|
53.448
|
17.888
|
9.267
|
48.707
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
298.273
|
448.521
|
990.896
|
326.130
|
142.866
|
246.428
|
131.725
|
485.574
|
187.310
|
124.910
|
151.653
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.915
|
-0.597
|
-1.496
|
-1.220
|
0.801
|
-0.894
|
0.877
|
-1.741
|
— | — | — | — | — |
No JSON data available for plots.