SCN Proteipedia

Hg_chrom9_TN10mRNA_17983

Organism: Heterodera glycines Gene Locus: chr9:7351761-7357891 Feature type: polypeptide

Protein Sequence

Length: 729

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.946	0.798	0.549	0.52	0.434	3.306	1.143	0.892	0.732	0.927	0.499	2.259	0.914	0.791	0.728	1.019	1.079	0.624	0.0	0.686	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_17001	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	0.966

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRPR	—	—	—	—	—	—	0.000	—	—	0.690	0.118	0.014	0.443	0.227	0.119	0.083	0.020	0.091	0.070

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001477	2.000	3.000	Hsc_gene_8842.t1;Hsc_gene_8842.t2;Hsc_gene_8842.t3	Hsc_gene_8842.t1;Hsc_gene_8842.t2;Hsc_gene_8842.t3	—	Q96J87.1 CUGBP Elav-like family member 6 [Homo sapiens]	KAH7730116.1 RNA binding protein [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0003723	GO:0008150_0.950\|GO:0009987_0.903\|GO:0065007_0.811\|GO:0050789_0.787\|GO:0005575_0.784\|GO:0110165_0.777\|GO:0003674_0.724\|GO:0005488_0.689\|GO:0005622_0.682\|GO:0050794_0.665\|GO:0008152_0.648\|GO:0009058_0.638\|GO:0044237_0.632\|GO:0043170_0.615\|GO:0044238_0.614\|GO:0044249_0.614\|GO:0009059_0.612\|GO:0016020_0.602\|GO:0010467_0.601\|GO:0019222_0.598\|GO:0031323_0.598\|GO:0097159_0.592\|GO:0060255_0.582\|GO:0006139_0.578\|GO:0003676_0.567\|GO:0009889_0.567\|GO:0010556_0.567\|GO:0031326_0.567\|GO:0010468_0.565\|GO:0016070_0.565\|GO:0090304_0.565\|GO:0043226_0.542\|GO:0043229_0.532\|GO:0080090_0.514\|GO:0016071_0.505\|GO:0003723_0.501	IPR000504+84-165_85-161_86-151_177-257_178-253_179-243_646-724_647-720_648-718+\|IPR012677+70-168_169-265_615-728+\|IPR034648+79-165+\|IPR035979+80-726_169-269+\|IPR050502+554-725+	SM00360+85-161_178-253_647-720+	PF00076+86-151_179-243_648-718+RNA_recognition_motif	G3DSA:3.30.70.330:FF:000010+74-169+CUGBP_Elav-like_family_member_4_isoform_3\|G3DSA:3.30.70.330:FF:000198+170-265+CUGBP_Elav-like_family_member_6_isoform_X3\|G3DSA:3.30.70.330:FF:000383+620-725+Sex_lethal,_isoform_D	PTHR48025+554-725+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-88;726-729	1.000	89-725	9urh_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.821	76241.710	8.767	15.500	14.266	7.407	44.307	55.693	8.642	5.624	56.241

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	greenyellow	785.420	1923.036	1875.513	726.034	172.839	144.911	72.658	453.007	572.828	993.593	813.265

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.264	-1.542	-1.262	-2.104	—	-0.992	1.542	-2.504	—	—	—	—	—

No JSON data available for plots.

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