Hg_chrom9_TN10mRNA_17985
Organism: Heterodera glycines Gene Locus: chr9:7363903-7364546 Feature type: polypeptideProtein Sequence
Length: 93
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.5 | 0.5 | 0.391 | 0.371 | 0.896 | 0.276 | 1.92 | 1.075 | 2.151 | 1.017 | 1.466 | 0.633 | 1.195 | 0.207 | 2.633 | 0.614 | 0.881 | 1.14 | 0.0 | 0.633 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17003
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.810
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKR
|
33-53
|
0.996
|
— | — | — | — |
0.000
|
— | — |
0.762
|
0.123
|
0.149
|
0.345
|
0.087
|
0.029
|
0.120
|
0.001
|
0.202
|
0.144
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000169
|
9.000
|
3.000
|
Hsc_gene_4515.t1;Hsc_gene_8785.t1;Hsc_gene_8844.t1
|
Hsc_gene_4515.t1;Hsc_gene_8783.t1;Hsc_gene_8785.t1;Hsc_gene_8799.t1;Hsc_gene_8844.t1
|
B0035.9;C50F4.7;F07B7.9;F17E9.12;F22B3.1;F45F2.3;F54E12.3;F55G1.11;K03A1.6;K06C4.10;K06C4.2;T10C6.14;T23D8.5;ZK131.1;ZK131.4;ZK131.8
|
Q43083.3 Histone H4 [Pyrenomonas salina]
|
ABK58640.1 histone 4, partial [Crassostrea virginica]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000786|GO:0003677|GO:0030527|GO:0046982
|
GO:0005575_0.842|GO:0110165_0.834|GO:0016020_0.702|GO:0005622_0.688|GO:0043226_0.679|GO:0043229_0.673|GO:0043227_0.609|GO:0043231_0.609
|
IPR001951+5-16_16-92_20-39_40-60_62-76+|IPR009072+2-83_3-72+|IPR019809+15-19+
|
SM00417+16-92+
|
— |
G3DSA:1.10.20.10:FF:000073+2-63+Histone_H4
|
PTHR10484+1-79+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-22
|
1.000
|
23-93
|
2hio_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.838
|
10297.120
|
11.775
|
15.000
|
32.258
|
8.602
|
45.161
|
54.839
|
24.731
|
7.527
|
44.086
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
3329.749
|
4137.997
|
1488.279
|
1542.806
|
1363.106
|
1905.079
|
1301.539
|
2976.587
|
2959.640
|
6829.649
|
5171.074
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.705
|
-1.560
|
0.161
|
-0.211
|
0.498
|
-0.540
|
0.544
|
-1.053
|
— | — |
-2.193
|
— | — |
No JSON data available for plots.