Hg_chrom9_TN10mRNA_17987
Organism: Heterodera glycines Gene Locus: chr9:7365843-7369266 Feature type: polypeptideProtein Sequence
Length: 400
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.523 | 1.047 | 0.909 | 0.345 | 0.5 | 0.962 | 0.595 | 1.25 | 1.722 | 1.757 | 0.758 | 1.029 | 1.806 | 0.529 | 1.48 | 1.393 | 0.779 | 0.985 | 2.115 | 0.882 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17005
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.942
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
KKSGSNSGGSSPRRKKMD,KIRRRRRRASKKSGSNSGGSSPRRKK
|
59-79
|
0.999
|
— | — | — | — |
0.000
|
— | — |
0.069
|
0.116
|
0.061
|
0.148
|
0.817
|
0.409
|
0.564
|
0.042
|
0.242
|
0.041
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005012
|
2.000
|
1.000
|
Hsc_gene_8846.t1
|
Hsc_gene_8846.t1
|
— |
G5EF48.1 TLC domain-containing protein fld-1 [Caenorhabditis elegans]
|
KAH7730103.1 Protein Y63D3A.8 [Aphelenchus avenae]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0008150_0.965|GO:0005575_0.944|GO:0110165_0.941|GO:0009987_0.932|GO:0016020_0.913|GO:0005886_0.887|GO:0071944_0.887|GO:0065007_0.882|GO:0071840_0.767|GO:0016043_0.760|GO:0065008_0.743|GO:0042592_0.707|GO:0061024_0.705|GO:0048878_0.699|GO:0044085_0.697|GO:0022607_0.690|GO:0010256_0.680|GO:0007009_0.676|GO:0055088_0.675|GO:0044091_0.670|GO:0055091_0.670|GO:0071709_0.670|GO:0097035_0.670
|
IPR006634+135-332_135-335_140-327+|IPR050846+18-342+
|
SM00724+135-335+
|
PF03798+140-327+TLC_domain
|
— |
PTHR13439+18-342+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;342-400
|
1.000
|
2-341
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.789
|
46248.750
|
10.282
|
22.000
|
22.750
|
14.750
|
45.500
|
54.500
|
14.750
|
8.000
|
43.750
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
darkgrey
|
2796.707
|
815.602
|
1526.286
|
1125.153
|
1311.623
|
1434.101
|
1318.176
|
2546.389
|
879.565
|
7796.921
|
4832.340
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.676
|
0.327
|
-0.333
|
0.189
|
0.143
|
— |
0.731
|
-0.810
|
-3.244
|
— | — | — | — |
No JSON data available for plots.