Hg_chrom9_TN10mRNA_17988
Organism: Heterodera glycines Gene Locus: chr9:7365843-7369266 Feature type: polypeptideProtein Sequence
Length: 365
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.573 | 1.083 | 0.946 | 0.378 | 0.548 | 0.983 | 0.554 | 1.233 | 1.583 | 1.74 | 0.789 | 0.967 | 1.903 | 0.474 | 1.454 | 1.448 | 0.719 | 0.955 | 2.107 | 0.886 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17005
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.942
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
RKKMDSKSLEIVPPNKKWR,KKMDSKSLEIVPPNKKWRI,KIRRRRRRASKKSGSNSGGSSPRRKKMD
|
59-79
|
0.999
|
— | — | — | — |
0.000
|
— | — |
0.065
|
0.117
|
0.045
|
0.111
|
0.838
|
0.386
|
0.474
|
0.036
|
0.278
|
0.021
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005012
|
2.000
|
1.000
|
Hsc_gene_8846.t1
|
Hsc_gene_8846.t1
|
— |
G5EF48.1 TLC domain-containing protein fld-1 [Caenorhabditis elegans]
|
KAH7730103.1 Protein Y63D3A.8 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0008150_0.964|GO:0005575_0.945|GO:0110165_0.941|GO:0009987_0.931|GO:0016020_0.917|GO:0005886_0.888|GO:0071944_0.888|GO:0065007_0.886|GO:0071840_0.768|GO:0016043_0.763|GO:0065008_0.742|GO:0042592_0.707|GO:0061024_0.707|GO:0048878_0.700|GO:0044085_0.697|GO:0022607_0.690|GO:0010256_0.680|GO:0007009_0.676|GO:0055088_0.675|GO:0044091_0.670|GO:0055091_0.670|GO:0071709_0.670|GO:0097035_0.670
|
IPR006634+100-297_100-300_105-292+|IPR050846+18-307+
|
SM00724+100-300+
|
PF03798+105-292+TLC_domain
|
— |
PTHR13439+18-307+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;307-365
|
1.000
|
2-306
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.807
|
42257.940
|
10.126
|
18.500
|
23.288
|
15.068
|
46.301
|
53.699
|
14.795
|
8.493
|
43.836
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
darkgrey
|
2796.707
|
815.602
|
1526.286
|
1125.153
|
1311.623
|
1434.101
|
1318.176
|
2546.389
|
879.565
|
7796.921
|
4832.340
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.676
|
0.327
|
-0.333
|
0.189
|
0.143
|
— |
0.731
|
-0.810
|
-3.244
|
— | — | — | — |
No JSON data available for plots.