SCN Proteipedia

Hg_chrom9_TN10mRNA_17989

Organism: Heterodera glycines Gene Locus: chr9:7499898-7504772 Feature type: polypeptide

Protein Sequence

Length: 556

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.899	0.962	0.818	0.93	0.929	0.876	0.685	1.619	0.999	1.556	0.79	0.952	1.399	1.211	1.468	1.31	0.619	0.818	1.66	0.317	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_17006	—	—	1.111	1.000	1.000	1.000	1.000	1.000	2.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	RREWNAVLELASPTPRPKK	—	—	44-72	0.991	—	—	0.000	—	—	0.577	0.157	0.035	0.495	0.249	0.049	0.057	0.021	0.089	0.047

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000945	4.000	2.000	Hsc_gene_4003.t1;Hsc_gene_8772.t1	Hsc_gene_10088.t1;Hsc_gene_10088.t2;Hsc_gene_10088.t3;Hsc_gene_4002.t1;Hsc_gene_4002.t2;Hsc_gene_4005.t1;Hsc_gene_8772.t1	—	Q8R554.1 OTU domain-containing protein 7A [Mus musculus]	KAK6106261.1 OTU-like cysteine protease family protein [Brugia pahangi]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.947\|GO:0005575_0.916\|GO:0110165_0.915\|GO:0003674_0.857\|GO:0005622_0.848\|GO:0008152_0.798\|GO:0044238_0.781\|GO:0005737_0.780\|GO:0043170_0.766\|GO:0019538_0.725\|GO:0003824_0.723\|GO:0036211_0.694\|GO:0043412_0.694\|GO:0016787_0.681\|GO:0140096_0.681\|GO:0009987_0.678\|GO:0043687_0.677\|GO:0070647_0.677\|GO:0004843_0.670\|GO:0008233_0.670\|GO:0008234_0.670\|GO:0016579_0.670\|GO:0019783_0.670\|GO:0070646_0.670\|GO:0101005_0.670\|GO:0065007_0.627\|GO:0050789_0.621\|GO:0050794_0.601\|GO:0050896_0.575\|GO:0032501_0.558\|GO:0044237_0.548\|GO:0009058_0.543\|GO:0051716_0.541\|GO:0044249_0.529\|GO:0009059_0.517\|GO:0019222_0.511\|GO:0007154_0.509\|GO:0023052_0.509\|GO:0048519_0.509\|GO:0031323_0.505\|GO:0010467_0.504\|GO:0006139_0.502\|GO:0060255_0.502\|GO:0080090_0.501	IPR003034+10-44+\|IPR028086+274-359+\|IPR036361+2-50_10-44+\|IPR051346+193-241+	SM00513+10-44+	PF14638+274-359+Folliculin-interacting_protein_C-terminus	—	PTHR13367+193-241+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-6	1.000	7-556	5lrw_C	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.889	62342.640	8.975	22.000	25.719	11.511	46.223	53.777	15.647	10.072	49.460

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	greenyellow	394.165	574.992	625.657	369.147	275.310	287.659	256.010	307.590	457.781	370.001	407.621

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-0.776	-0.652	-0.454	—	—	—	—	—	—	—	—	—

No JSON data available for plots.

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