Hg_chrom9_TN10mRNA_17994
Organism: Heterodera glycines Gene Locus: chr9:7535119-7536330 Feature type: polypeptideProtein Sequence
Length: 218
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.853 | 0.64 | 1.334 | 1.424 | 0.841 | 1.059 | 0.655 | 1.147 | 1.529 | 1.178 | 0.556 | 2.428 | 2.039 | 0.618 | 1.123 | 1.442 | 0.15 | 1.043 | 0.706 | 0.944 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17011
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.859
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
lysosome_vacuole
|
— |
RKSMYEKLMAKGKRI
|
14-34
|
0.922
|
— | — | — | — |
0.005
|
— | — |
0.185
|
0.247
|
0.008
|
0.211
|
0.306
|
0.569
|
0.281
|
0.010
|
0.503
|
0.109
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000325
|
6.000
|
3.000
|
Hsc_gene_23529.t1;Hsc_gene_8795.t1;Hsc_gene_8852.t1
|
— | — |
Q18071.1 Organic solute transporter alpha-like protein 2 [Caenorhabditis elegans]
|
KAI6226256.1 Organic solute transporter alpha-like protein 1 [Aphelenchoides fujianensis];KAI6239730.1 Organic solute transporter alpha-like protein 1 [Aphelenchoides fujianensis]
|
No
|
0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.907|GO:0110165_0.904|GO:0016020_0.846|GO:0071944_0.834|GO:0005886_0.826|GO:0098590_0.597|GO:1990075_0.540
|
IPR005178+42-157_56-178+
|
— |
PF03619+42-157+Organic_solute_transporter_Ostalpha
|
— |
PTHR23423+56-178+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
195-218
|
1.000
|
1-194
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.552
|
24635.360
|
5.055
|
-4.500
|
23.853
|
13.761
|
41.743
|
58.257
|
11.468
|
12.385
|
48.165
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
red
|
171.528
|
47.582
|
46.789
|
51.553
|
108.642
|
100.954
|
110.336
|
63.710
|
0.000
|
551.849
|
315.342
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
1.044
|
— | — |
-0.773
|
0.937
|
-9.904
|
6.545
|
— | — | — |
No JSON data available for plots.