Hg_chrom9_TN10mRNA_17996
Organism: Heterodera glycines Gene Locus: chr9:7542137-7545780 Feature type: polypeptideProtein Sequence
Length: 316
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.81 | 0.589 | 0.921 | 0.655 | 1.108 | 0.974 | 0.64 | 1.899 | 0.985 | 1.155 | 0.911 | 1.675 | 0.879 | 1.217 | 2.26 | 0.904 | 0.882 | 0.815 | 2.191 | 0.465 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17013
|
— | — |
0.778
|
1.000
|
1.000
|
1.000
|
1.000
|
— | — |
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRTLTVLWRHWRRGER,PPPKDRPSRVRTRHRQHGH
|
34-60
|
0.969
|
— | — | — | — |
0.000
|
— | — |
0.496
|
0.274
|
0.067
|
0.427
|
0.073
|
0.031
|
0.050
|
0.020
|
0.179
|
0.205
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000945
|
4.000
|
2.000
|
Hsc_gene_4003.t1;Hsc_gene_8772.t1
|
Hsc_gene_8772.t1
|
— | — |
AKF02777.1 tetratricopeptide TPR-1, partial [Radopholus similis]
|
No
|
-0.460
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR003034+10-44_12-44+|IPR036361+2-49_10-46+
|
SM00513+10-44+
|
PF02037+12-44+SAP_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2;315-316
|
1.000
|
3-314
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.681
|
36593.040
|
10.484
|
23.000
|
32.595
|
11.392
|
50.633
|
49.367
|
20.886
|
11.709
|
45.253
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
250.172
|
41.873
|
37.872
|
20.387
|
14.239
|
12.212
|
8.616
|
25.214
|
20.243
|
1019.164
|
591.055
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.175
|
-0.785
|
— | — | — |
0.948
|
-1.410
|
-4.165
|
— |
-4.210
|
— | — |
No JSON data available for plots.