Hg_chrom9_TN10mRNA_17998
Organism: Heterodera glycines Gene Locus: chr9:7562253-7563289 Feature type: polypeptideProtein Sequence
Length: 152
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.765 | 1.071 | 1.077 | 0.681 | 0.987 | 1.012 | 0.548 | 0.987 | 1.462 | 1.334 | 0.698 | 1.935 | 0.914 | 1.392 | 1.208 | 0.752 | 1.186 | 0.698 | 1.518 | 1.354 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17015
|
— | — |
1.111
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.435
|
0.203
|
0.010
|
0.593
|
0.182
|
0.085
|
0.189
|
0.044
|
0.192
|
0.140
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000313
|
7.000
|
2.000
|
Hsc_gene_17414.t1;Hsc_gene_23528.t1
|
— | — |
D3ZDK2.1 Ubiquitin-conjugating enzyme E2 D1 [Rattus norvegicus]
|
XP_051686917.1 ubiquitin-conjugating enzyme E2 D1-like [Oryctolagus cuniculus]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.847|GO:0003674_0.781|GO:0003824_0.675|GO:0008152_0.658|GO:0044238_0.640|GO:0016740_0.634|GO:0043170_0.621|GO:0140096_0.620|GO:0016746_0.616|GO:0016755_0.609|GO:0019787_0.609|GO:0004842_0.607|GO:0019538_0.599|GO:0005575_0.531|GO:0110165_0.515
|
IPR000608+1-151_4-146_5-145+|IPR016135+1-151_1-152+|IPR050113+2-150+
|
SM00212+4-151+
|
PF00179+5-145+Ubiquitin-conjugating_enzyme
|
G3DSA:3.10.110.10:FF:000101+1-151+Ubiquitin-conjugating_enzyme_E2_D2
|
PTHR24067+2-150+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-152
|
2e2c_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.589
|
17409.960
|
6.227
|
-0.500
|
24.342
|
11.842
|
45.395
|
54.605
|
12.500
|
11.842
|
48.026
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
royalblue
|
152.720
|
5.378
|
15.159
|
33.383
|
40.070
|
384.373
|
39.780
|
1225.244
|
0.000
|
14.380
|
8.217
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.269
|
2.499
|
1.245
|
— |
3.272
|
-3.261
|
1.560
|
-4.798
|
— |
5.918
|
— | — | — |
No JSON data available for plots.