Hg_chrom9_TN10mRNA_18001
Organism: Heterodera glycines Gene Locus: chr9:7577020-7584615 Feature type: polypeptideProtein Sequence
Length: 687
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.931 | 1.083 | 1.482 | 0.853 | 0.534 | 2.538 | 0.485 | 2.329 | 0.809 | 1.397 | 0.728 | 0.514 | 0.849 | 0.98 | 1.099 | 1.081 | 1.074 | 0.816 | 0.672 | 0.385 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17018
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.666
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKKR,RRRKRKK
|
31-60
|
0.973
|
5-62
|
0.869
|
— | — |
0.000
|
— | — |
0.931
|
0.079
|
0.006
|
0.258
|
0.065
|
0.036
|
0.046
|
0.015
|
0.082
|
0.028
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002577
|
2.000
|
2.000
|
Hsc_gene_8855.t1;Hsc_gene_8856.t1
|
— | — |
G5EFL9.1 PAS domain-containing protein cky-1 [Caenorhabditis elegans]
|
KHJ97394.1 Helix-loop-helix DNA-binding domain protein [Oesophagostomum dentatum]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046983
|
GO:0008150_0.811|GO:0032502_0.661|GO:0048856_0.661|GO:0032501_0.660|GO:0007275_0.619|GO:0048731_0.613|GO:0005575_0.612|GO:0110165_0.610|GO:0003674_0.601|GO:0005488_0.563|GO:0005622_0.533|GO:0016020_0.521
|
IPR011598+32-85+
|
— | — | — |
PTHR23043+32-177+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
371-416;555-687
|
2.000
|
1-370;417-554
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.588
|
76796.890
|
6.935
|
8.000
|
26.201
|
9.898
|
54.876
|
45.124
|
14.847
|
11.354
|
51.965
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
196.314
|
52.975
|
38.862
|
47.977
|
34.003
|
46.321
|
35.509
|
65.658
|
12.304
|
729.158
|
421.935
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.678
|
— |
0.414
|
-0.530
|
— | — | — |
-0.745
|
-6.035
|
— |
-4.213
|
— | — |
No JSON data available for plots.