SCN Proteipedia

Hg_chrom9_TN10mRNA_18002

Organism: Heterodera glycines Gene Locus: chr9:7597212-7608267 Feature type: polypeptide

Protein Sequence

Length: 1,023

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.444	0.727	0.604	0.506	0.603	2.582	0.78	2.053	0.456	1.083	0.267	1.323	0.57	1.729	1.217	1.76	0.978	0.666	0.376	0.316	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_17019	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	—	—	28-48	0.994	—	—	0.000	—	—	0.867	0.139	0.012	0.408	0.073	0.053	0.047	0.029	0.094	0.042

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0005013	1.000	2.000	Hsc_gene_23526.t1;Hsc_gene_8857.t1	—	—	Q9UL36.2 Zinc finger protein 236 [Homo sapiens]	KAH7726716.1 zinc finger protein [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.966\|GO:0009987_0.938\|GO:0050896_0.793\|GO:0051716_0.775\|GO:0042221_0.720\|GO:1901700_0.697\|GO:0070887_0.692\|GO:0042592_0.689\|GO:1901701_0.681\|GO:0048878_0.676\|GO:0019725_0.675\|GO:0001678_0.670\|GO:0009743_0.670\|GO:0009746_0.670\|GO:0009749_0.670\|GO:0033500_0.670\|GO:0034284_0.670\|GO:0042593_0.670\|GO:0055082_0.670\|GO:0071322_0.670\|GO:0071326_0.670\|GO:0071331_0.670\|GO:0071333_0.670	IPR013087+550-573_550-578_552-573_588-610_588-615_590-610_616-638_616-643_618-638_644-666+\|IPR036236+585-625_614-666+	SM00355+550-573_588-610_616-638_644-666+	PF00096+588-610_616-638_644-666+Zinc_finger,_C2H2_type	G3DSA:3.30.160.60:FF:000226+581-612+Zinc_finger_protein_236_variant\|G3DSA:3.30.160.60:FF:000395+640-668+zinc_finger_protein_513\|G3DSA:3.30.160.60:FF:000404+614-638+POZ-,_AT_hook-,_and_zinc_finger-containing_protein_1	PTHR24399+302-666+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-94;232-549;683-1023	2.000	95-231;550-682	2i13_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.931	108572.680	8.466	29.000	18.768	7.722	50.244	49.756	11.828	6.940	58.553

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	1572.530	3624.434	2046.433	1505.472	906.270	1105.840	643.340	1649.214	1286.793	1609.348	1471.110

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.053	-1.405	-0.335	-0.763	0.301	-0.773	—	-1.221	—	—	—	—	—

No JSON data available for plots.

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