SCN Proteipedia

Hg_chrom9_TN10mRNA_18003

Organism: Heterodera glycines Gene Locus: chr9:7609518-7664308 Feature type: polypeptide

Protein Sequence

Length: 2,762

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.596	1.204	0.764	0.812	0.863	1.81	1.052	2.245	0.491	0.817	0.483	1.576	0.945	1.086	0.783	1.397	1.11	0.576	0.279	0.373	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_17020	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	PRAKRAR,KKERVIVEEEEEKKRGE,KRVVQVWFQNARAKERKC	—	—	55-87	0.895	—	—	0.000	—	—	0.787	0.064	0.008	0.374	0.045	0.057	0.066	0.006	0.090	0.058

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0013119	1.000	1.000	Hsc_gene_8858.t1	Hsc_gene_8860.t1;Hsc_gene_8861.t1;Hsc_gene_8861.t2;Hsc_gene_8861.t3	—	Q9C0A1.3 Zinc finger homeobox protein 2 [Homo sapiens]	KAH7726739.1 Homeobox domain containing protein, partial [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000981\|GO:0003677\|GO:0006355	GO:0008150_0.873\|GO:0005575_0.808\|GO:0110165_0.804\|GO:0005622_0.759\|GO:0043226_0.731\|GO:0043229_0.697\|GO:0016020_0.696\|GO:0032501_0.690\|GO:0065007_0.667\|GO:0009987_0.661\|GO:0050789_0.655\|GO:0003674_0.638\|GO:0005488_0.621\|GO:0032502_0.600\|GO:0048856_0.600\|GO:0043227_0.590\|GO:0043231_0.548\|GO:0005634_0.541\|GO:0003676_0.527\|GO:0097159_0.527\|GO:0050794_0.523	IPR001356+1464-1524_1466-1528_1467-1523_1467-1526_1887-1947_1889-1951_1890-1946_2392-2452_2394-2456_2395-2451+\|IPR009057+1452-1526_1875-1946_2381-2451+\|IPR013087+161-184_161-189_162-184_163-184_216-240_216-247_338-362_397-422_451-473_586-611_709-731_709-736_711-731_804-830_880-904_880-905_882-904_2017-2037_2194-2218_2480-2504_2482-2504_2675-2695_2675-2703_2712-2736_2712-2741_2714-2736+\|IPR017970+1499-1522+\|IPR036236+159-236_2477-2511+\|IPR051968+1994-2134+	SM00355+161-184_216-240_338-362_397-422_451-473_586-611_709-731_804-830_880-904_2017-2037_2194-2218_2480-2504_2675-2695_2712-2736+\|SM00389+1466-1528_1889-1951_2394-2456+	PF00046+1467-1523_1890-1946_2395-2451+Homeodomain\|PF00096+162-184+Zinc_finger,_C2H2_type	G3DSA:1.10.10.60:FF:000064+1462-1527+Zinc_finger_homeobox_protein_4\|G3DSA:1.10.10.60:FF:000080+1885-1948+Zinc_finger_homeobox_protein_2\|G3DSA:3.30.160.60:FF:000081+214-240+Zinc_finger_homeobox_protein_4	PTHR45891+1994-2134+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-79;486-794;898-1324;1391-2400;2737-2762	4.000	80-485;795-897;1325-1390;2401-2736	2da1_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.777	290431.770	6.462	-3.000	20.891	9.522	49.674	50.326	11.513	9.377	60.282

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	greenyellow	2492.317	4235.396	3729.014	1949.794	1104.364	1138.473	760.827	2135.569	2551.149	3345.485	3005.055

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.412	-1.256	-0.828	-0.852	—	-0.572	0.809	-1.350	—	—	—	—	—

No JSON data available for plots.

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