Hg_chrom9_TN10mRNA_18004
Organism: Heterodera glycines Gene Locus: chr9:7696383-7708379 Feature type: polypeptideProtein Sequence
Length: 964
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.832 | 0.941 | 0.868 | 0.572 | 0.899 | 1.25 | 0.877 | 0.83 | 1.36 | 1.22 | 0.487 | 2.746 | 1.7 | 0.579 | 1.313 | 1.156 | 0.901 | 0.943 | 1.037 | 0.976 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17021
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.887
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — |
18-40
|
0.998
|
27-49
|
0.957
|
— | — |
0.000
|
— | — |
0.124
|
0.077
|
0.006
|
0.091
|
0.404
|
0.684
|
0.571
|
0.008
|
0.609
|
0.057
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001475
|
2.000
|
3.000
|
Hsc_gene_8768.t1;Hsc_gene_8863.t1;Hsc_gene_8870.t1
|
Hsc_gene_8863.t1
|
— |
Q9VRC9.2 NPC intracellular cholesterol transporter 1 homolog 1b [Drosophila melanogaster]
|
KAI1728640.1 patched family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0008150_0.965|GO:0005575_0.838|GO:0110165_0.838|GO:0009987_0.816|GO:0016020_0.789|GO:0071944_0.777|GO:0005886_0.761|GO:0051179_0.727|GO:0006810_0.725|GO:0051234_0.725|GO:0032501_0.694|GO:0032502_0.578|GO:0048856_0.578|GO:0007275_0.548|GO:0048731_0.546
|
IPR000731+412-579+|IPR003392+108-957+|IPR051697+65-258+
|
— |
PF02460+108-957+Patched_family
|
— |
PTHR10796+65-258+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-32
|
1.000
|
33-964
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.673
|
108620.680
|
6.801
|
3.000
|
21.473
|
12.448
|
43.983
|
56.017
|
11.307
|
10.166
|
47.822
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
greenyellow
|
1831.921
|
453.984
|
2672.883
|
847.431
|
587.391
|
2055.255
|
658.653
|
4008.930
|
710.939
|
3249.754
|
2161.690
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.331
|
0.763
|
-1.551
|
-0.560
|
1.823
|
-1.633
|
0.865
|
-2.466
|
— | — | — | — | — |
No JSON data available for plots.