Hg_chrom9_TN10mRNA_18005
Organism: Heterodera glycines Gene Locus: chr9:7709349-7721132 Feature type: polypeptideProtein Sequence
Length: 1,023
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.159 | 0.818 | 0.729 | 0.742 | 0.668 | 0.952 | 0.675 | 1.173 | 1.151 | 1.453 | 0.355 | 2.013 | 1.575 | 0.79 | 1.117 | 1.201 | 1.282 | 1.17 | 1.278 | 0.604 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17022
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-Not_Clustered
|
0.906
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— |
KRKL,RKRK,RRKR
|
— | — |
49-73
|
0.999
|
— | — |
0.000
|
— | — |
0.104
|
0.119
|
0.006
|
0.111
|
0.415
|
0.671
|
0.576
|
0.021
|
0.581
|
0.070
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002578
|
1.000
|
3.000
|
Hsc_gene_276.t1;Hsc_gene_276.t2;Hsc_gene_276.t3
|
Hsc_gene_23919.t1;Hsc_gene_276.t1;Hsc_gene_276.t2;Hsc_gene_276.t3;Hsc_gene_276.t4
|
— |
Q03602.2 Patched-related protein 9 [Caenorhabditis elegans]
|
KAI1728642.1 patched family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.862|GO:0110165_0.860|GO:0071944_0.821|GO:0005886_0.816|GO:0016020_0.816|GO:0008150_0.713|GO:0009987_0.604|GO:0006810_0.532|GO:0051179_0.532|GO:0051234_0.532|GO:0098590_0.523
|
IPR000731+365-548+|IPR003392+103-1003+|IPR051697+70-1007+
|
— |
PF02460+103-1003+Patched_family
|
— |
PTHR10796+70-1007+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-58
|
1.000
|
59-1023
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.666
|
112602.050
|
7.260
|
10.000
|
18.182
|
11.730
|
41.642
|
58.358
|
10.166
|
8.016
|
53.372
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
blue
|
1806.033
|
335.213
|
401.127
|
783.919
|
931.387
|
277.076
|
252.579
|
365.292
|
49.116
|
6609.585
|
3797.955
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.089
|
1.074
|
0.216
|
-1.734
|
— | — | — |
-7.165
|
4.127
|
-2.497
|
— | — |
No JSON data available for plots.