Hg_chrom9_TN10mRNA_18007
Organism: Heterodera glycines Gene Locus: chr9:7747435-7753845 Feature type: polypeptideProtein Sequence
Length: 510
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.117 | 1.186 | 0.713 | 1.014 | 0.621 | 0.804 | 0.397 | 1.275 | 0.959 | 1.881 | 0.267 | 1.615 | 1.089 | 1.094 | 1.401 | 1.064 | 1.189 | 1.07 | 1.357 | 0.865 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17024
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.983
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
KRVK
|
42-62
|
0.991
|
— | — | — | — |
0.000
|
— | — |
0.095
|
0.117
|
0.014
|
0.192
|
0.288
|
0.323
|
0.276
|
0.006
|
0.794
|
0.065
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005014
|
1.000
|
2.000
|
Hsc_gene_281.t1;Hsc_gene_3187.t1
|
Hsc_gene_281.t1;Hsc_gene_282.t1
|
— |
Q18179.2 Putative neuropeptide Y receptor 11 [Caenorhabditis elegans]
|
KAF7638754.1 G_PROTEIN_RECEP_F1_2 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0004983|GO:0007186|GO:0016020
|
GO:0008150_0.945|GO:0009987_0.921|GO:0065007_0.891|GO:0050789_0.876|GO:0050794_0.854|GO:0023052_0.837|GO:0007154_0.836|GO:0050896_0.835|GO:0003674_0.825|GO:0051716_0.805|GO:0005575_0.795|GO:0110165_0.787|GO:0007165_0.777|GO:0060089_0.763|GO:0038023_0.762|GO:0016020_0.734|GO:0004888_0.729|GO:0007186_0.722|GO:0005886_0.714|GO:0071944_0.714|GO:0004930_0.626|GO:0032501_0.599|GO:0005488_0.569
|
IPR000276+25-49_34-330_41-315_58-79_103-125_209-232_260-284_297-323+|IPR000611+50-62_80-92_103-118_302-311_313-326+|IPR017452+40-315+
|
SM01381+34-330+
|
PF00001+41-315+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR24235+17-357+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
356-510
|
1.000
|
1-355
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.734
|
57055.190
|
8.110
|
11.500
|
18.824
|
11.176
|
41.765
|
58.235
|
11.176
|
7.647
|
52.353
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
1062.427
|
542.782
|
909.080
|
444.514
|
248.723
|
480.427
|
332.725
|
730.976
|
88.164
|
3198.534
|
1865.519
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.516
|
-0.425
|
-0.925
|
-0.871
|
0.965
|
-0.522
|
0.507
|
-0.998
|
-5.306
|
— |
-3.260
|
— | — |
No JSON data available for plots.