SCN Proteipedia

Hg_chrom9_TN10mRNA_18010

Organism: Heterodera glycines Gene Locus: chr9:7763443-7768728 Feature type: polypeptide

Protein Sequence

Length: 812

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.659	0.859	0.873	0.34	1.683	1.705	0.821	1.232	0.985	0.882	1.194	1.449	0.958	0.995	1.407	1.091	0.888	0.84	0.758	0.688	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_17027	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	24-J3_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	cytoplasm	—	RRGMPIVQSFSVGGKIKRF	—	—	44-71	0.899	—	—	0.000	—	—	0.339	0.135	0.005	0.823	0.142	0.105	0.218	0.020	0.095	0.019

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0013122	1.000	1.000	Hsc_gene_288.t1	Hsc_gene_288.t1	—	Q6NZJ6.1 Eukaryotic translation initiation factor 4 gamma 1 [Mus musculus]	KAF7624679.1 MIF4G domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003723\|GO:0003743\|GO:0005515	GO:0008150_0.903\|GO:0005575_0.866\|GO:0110165_0.863\|GO:0005622_0.806\|GO:0009987_0.804\|GO:0003674_0.792\|GO:0005488_0.745\|GO:0065007_0.742\|GO:0050789_0.724\|GO:0050794_0.712\|GO:0097159_0.642\|GO:0005737_0.628\|GO:0043226_0.619\|GO:0003676_0.618\|GO:0008152_0.614\|GO:0043170_0.614\|GO:0044238_0.598\|GO:0009058_0.594\|GO:0009059_0.594\|GO:0010467_0.594\|GO:0044237_0.594\|GO:0044249_0.594\|GO:0003723_0.587\|GO:0019538_0.559\|GO:0043229_0.555\|GO:0019222_0.550\|GO:0060255_0.540\|GO:0031323_0.539\|GO:0080090_0.533\|GO:0016020_0.527\|GO:0009889_0.522\|GO:0031326_0.522\|GO:0010556_0.518\|GO:0010468_0.517\|GO:0006412_0.507\|GO:0006414_0.507	IPR003890+397-645+\|IPR016024+389-647+\|IPR045208+132-756+	SM00543+397-645+	PF02854+397-645+MIF4G_domain	—	PTHR23253+132-756+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	41-391;647-812	2.000	1-40;392-646	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.726	92211.590	7.429	9.000	32.143	9.236	55.542	44.458	17.241	14.901	45.813

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	red	1113.888	408.675	812.694	899.056	1834.913	1644.639	2077.790	648.196	29.188	1729.133	1000.585

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.758	1.001	0.258	0.998	—	0.348	-1.454	1.826	-6.009	5.149	—	—	—

No JSON data available for plots.

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