Hg_chrom9_TN10mRNA_18011
Organism: Heterodera glycines Gene Locus: chr9:7769121-7771801 Feature type: polypeptideProtein Sequence
Length: 113
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.926 | 1.029 | 1.287 | 0.915 | 1.18 | 0.454 | 1.791 | 1.327 | 1.18 | 0.957 | 0.268 | 2.082 | 0.983 | 1.532 | 1.445 | 1.138 | 0.145 | 0.805 | 0.681 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17028
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— | — | — | — |
11-46
|
0.992
|
— | — |
0.000
|
— | — |
0.235
|
0.097
|
0.018
|
0.401
|
0.166
|
0.397
|
0.276
|
0.006
|
0.616
|
0.028
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013123
|
1.000
|
1.000
|
Hsc_gene_289.t1
|
Hsc_gene_289.t1
|
— | — |
XP_001891543.2 MGC82645 protein, putative [Brugia malayi];CDQ01818.1 Bm13210 [Brugia malayi];VIO97015.1 MGC82645 protein, putative [Brugia malayi]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0031267|GO:0035023
|
GO:0008150_0.899|GO:0005575_0.635|GO:0110165_0.610|GO:0003674_0.517
|
IPR000095+37-50+|IPR036936+30-74+|IPR039056+16-78+
|
— | — | — |
PTHR13502+16-78+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
45-113
|
1.000
|
1-44
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.785
|
11872.280
|
4.651
|
-4.500
|
25.664
|
7.080
|
40.708
|
59.292
|
11.504
|
14.159
|
59.292
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
turquoise
|
947.114
|
1131.913
|
1373.444
|
1166.923
|
1410.738
|
1502.078
|
615.618
|
961.818
|
62.111
|
1036.093
|
618.672
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
-0.126
|
0.242
|
— |
-1.278
|
-0.745
|
-0.503
|
-4.191
|
4.435
|
— | — | — |
No JSON data available for plots.