Hg_chrom9_TN10mRNA_18014
Organism: Heterodera glycines Gene Locus: chr9:7799301-7805422 Feature type: polypeptideProtein Sequence
Length: 499
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.909 | 1.025 | 0.838 | 0.622 | 0.434 | 0.771 | 0.763 | 1.303 | 1.603 | 1.706 | 0.547 | 1.297 | 2.115 | 0.732 | 0.859 | 1.088 | 0.723 | 1.184 | 1.542 | 1.061 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17031
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.749
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.112
|
0.105
|
0.018
|
0.104
|
0.370
|
0.640
|
0.381
|
0.100
|
0.458
|
0.077
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002175
|
2.000
|
2.000
|
Hsc_gene_1244.t1;Hsc_gene_1244.t2
|
Hsc_gene_1244.t1;Hsc_gene_13992.t1
|
— |
Q14CX5.1 Transmembrane protein 180 [Homo sapiens]
|
KAI1728336.1 MFS/sugar transport protein domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.913|GO:0110165_0.913|GO:0016020_0.875|GO:0071944_0.862|GO:0005886_0.860
|
IPR036259+9-474_13-482+|IPR040035+11-492+
|
— |
PF13347+22-205_339-487+MFS/sugar_transport_protein
|
— |
PTHR28658+11-492+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-499
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.733
|
55954.270
|
8.055
|
9.500
|
17.635
|
15.832
|
37.074
|
62.926
|
10.421
|
7.214
|
48.697
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
turquoise
|
522.262
|
386.602
|
392.793
|
495.693
|
502.163
|
645.458
|
519.860
|
303.084
|
245.627
|
883.557
|
610.158
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.205
|
0.221
|
0.443
|
— |
0.376
|
-0.302
|
-1.194
|
0.919
|
— | — | — | — | — |
No JSON data available for plots.