Hg_chrom9_TN10mRNA_18015
Organism: Heterodera glycines Gene Locus: chr9:7805733-7806749 Feature type: polypeptideProtein Sequence
Length: 187
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.808 | 1.492 | 0.972 | 2.582 | 0.98 | 0.548 | 0.828 | 1.337 | 1.664 | 1.156 | 1.053 | 1.258 | 2.08 | 0.309 | 1.31 | 0.917 | 0.263 | 0.567 | 0.0 | 1.101 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17032
|
— | — |
1.889
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
— | — | — | — | — | — |
1-24
|
0.996
|
1.000
|
0.000
|
0.000
|
0.485
|
0.571
|
0.063
|
0.557
|
0.095
|
0.136
|
0.083
|
0.186
|
0.089
|
0.474
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004018
|
2.000
|
1.000
|
Hsc_gene_8832.t2
|
Hsc_gene_13993.t1;Hsc_gene_8832.t1;Hsc_gene_8832.t2
|
— | — |
KAI1728648.1 stanniocalcin family domain-containing protein [Ditylenchus destructor]
|
No
|
0.410
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005179|GO:0005576
|
— |
IPR004978+45-176_46-175+
|
— |
PF03298+46-175+Stanniocalcin_family
|
— |
PTHR11245+45-176+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-187
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.792
|
21262.590
|
7.994
|
6.500
|
27.273
|
13.904
|
43.850
|
56.150
|
16.043
|
11.230
|
46.524
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
blue
|
1070.398
|
14.954
|
20.368
|
144.460
|
190.679
|
116.369
|
88.473
|
40.487
|
1.382
|
4451.035
|
2544.041
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
3.137
|
2.933
|
0.368
|
-0.698
|
-0.385
|
-1.634
|
1.273
|
-8.777
|
7.041
|
— | — |
-5.201
|