Hg_chrom9_TN10mRNA_18026
Organism: Heterodera glycines Gene Locus: chr9:7837335-7847509 Feature type: polypeptideProtein Sequence
Length: 914
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.891 | 1.12 | 0.915 | 0.868 | 0.857 | 0.842 | 0.586 | 1.641 | 1.507 | 1.464 | 0.448 | 1.738 | 1.884 | 0.589 | 1.116 | 1.016 | 0.951 | 1.144 | 0.757 | 0.901 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17042
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.738
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
lysosome_vacuole
|
— |
KRRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.101
|
0.113
|
0.004
|
0.115
|
0.351
|
0.655
|
0.549
|
0.010
|
0.532
|
0.086
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002253
|
3.000
|
1.000
|
Hsc_gene_13988.t1
|
Hsc_gene_13978.t1;Hsc_gene_13987.t1;Hsc_gene_13988.t1
|
— |
Q9VRC9.2 NPC intracellular cholesterol transporter 1 homolog 1b [Drosophila melanogaster]
|
KAF7638765.1 SSD domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.875|GO:0110165_0.875|GO:0071944_0.838|GO:0016020_0.833|GO:0005886_0.830|GO:0008150_0.696|GO:0009987_0.558|GO:0005622_0.522
|
IPR000731+283-430+|IPR003392+19-899+|IPR051697+21-900+
|
— |
PF02460+19-899+Patched_family
|
— |
PTHR10796+21-900+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-914
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.505
|
103253.090
|
6.445
|
-1.000
|
21.882
|
14.114
|
42.888
|
57.112
|
11.707
|
10.175
|
48.468
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
turquoise
|
1400.142
|
857.644
|
802.074
|
653.886
|
1712.023
|
1879.291
|
769.993
|
2205.551
|
20.947
|
2779.736
|
1597.398
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.326
|
-0.528
|
-0.186
|
1.357
|
— |
-1.279
|
— |
-1.380
|
-7.161
|
5.166
|
— | — | — |
No JSON data available for plots.